RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 PNNQ9H307 717 aaKnown RBP14.57□□□□□ -0.08
TRIM3-211ENST00000532542 NEUROD2Q15784 382 aa14.57□□□□□ -0.08
TRIM3-211ENST00000532542 U2SURPO15042 1029 aaKnown RBP14.56□□□□□ -0.08
TRIM3-211ENST00000532542 PNISRQ8TF01 805 aaKnown RBP14.56□□□□□ -0.08
TRIM3-211ENST00000532542 RCAN3Q9UKA8 241 aa14.55□□□□□ -0.08
TRIM3-211ENST00000532542 MINK1Q8N4C8 1332 aaPredicted RBP14.55□□□□□ -0.08
TRIM3-211ENST00000532542 IDI1Q13907 227 aa14.55□□□□□ -0.08
TRIM3-211ENST00000532542 SPATA31E1Q6ZUB1 1445 aa14.55□□□□□ -0.08
TRIM3-211ENST00000532542 NOS1P29475 1434 aa14.54□□□□□ -0.08
TRIM3-211ENST00000532542 ZFYVE16Q7Z3T8 1539 aa14.53□□□□□ -0.08
TRIM3-211ENST00000532542 GOLGA2Q08379 1002 aa14.52□□□□□ -0.09
TRIM3-211ENST00000532542 C14orf93Q9H972 538 aaKnown RBP14.52□□□□□ -0.09
TRIM3-211ENST00000532542 U2AF1L5P0DN76 240 aaPredicted RBP14.51□□□□□ -0.09
TRIM3-211ENST00000532542 U2AF1Q01081 240 aaKnown RBP eCLIP14.51□□□□□ -0.09
TRIM3-211ENST00000532542 GPRASP1Q5JY77 1395 aa14.51□□□□□ -0.09
TRIM3-211ENST00000532542 DISP3Q9P2K9 1392 aa14.51□□□□□ -0.09
TRIM3-211ENST00000532542 C14orf37Q86TY3 774 aa14.51□□□□□ -0.09
TRIM3-211ENST00000532542 PPP2R1AP30153 589 aa14.51□□□□□ -0.09
TRIM3-211ENST00000532542 B4GALNT3Q6L9W6 998 aa14.51□□□□□ -0.09
TRIM3-211ENST00000532542 MLH3Q9UHC1 1453 aa14.5□□□□□ -0.09
TRIM3-211ENST00000532542 TESK2Q96S53 571 aa14.5□□□□□ -0.09
TRIM3-211ENST00000532542 NGEFQ8N5V2 710 aa14.5□□□□□ -0.09
TRIM3-211ENST00000532542 ABCA9Q8IUA7 1624 aa14.5□□□□□ -0.09
TRIM3-211ENST00000532542 UNC13BO14795 1591 aa14.49□□□□□ -0.09
TRIM3-211ENST00000532542 IQGAP3Q86VI3 1631 aa14.49□□□□□ -0.09
TRIM3-211ENST00000532542 CABP2Q9NPB3 220 aa14.49□□□□□ -0.09
TRIM3-211ENST00000532542 ATP10AO60312 1499 aa14.49□□□□□ -0.09
TRIM3-211ENST00000532542 CCDC146Q8IYE0 955 aa14.48□□□□□ -0.09
TRIM3-211ENST00000532542 FBXO31Q5XUX0 539 aaPredicted RBP14.48□□□□□ -0.09
TRIM3-211ENST00000532542 PRAM1Q96QH2 718 aa14.48□□□□□ -0.09
TRIM3-211ENST00000532542 PLA2R1Q13018 1463 aa14.47□□□□□ -0.09
TRIM3-211ENST00000532542 ANP32AP39687 249 aaKnown RBP14.47□□□□□ -0.09
TRIM3-211ENST00000532542 SLC12A5Q9H2X9 1139 aa14.47□□□□□ -0.09
TRIM3-211ENST00000532542 MYT1Q01538 1121 aa14.46□□□□□ -0.1
TRIM3-211ENST00000532542 PTPRTO14522 1441 aa14.45□□□□□ -0.1
TRIM3-211ENST00000532542 TRPM2O94759 1503 aa14.45□□□□□ -0.1
TRIM3-211ENST00000532542 ZBTB47Q9UFB7 747 aaPredicted RBP14.45□□□□□ -0.1
TRIM3-211ENST00000532542 ADAMTS8Q9UP79 889 aa14.45□□□□□ -0.1
TRIM3-211ENST00000532542 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.44□□□□□ -0.1
TRIM3-211ENST00000532542 COL17A1Q9UMD9 1497 aaPredicted RBP14.44□□□□□ -0.1
TRIM3-211ENST00000532542 ATAD2Q6PL18 1390 aa14.43□□□□□ -0.1
TRIM3-211ENST00000532542 APAF1O14727 1248 aa14.42□□□□□ -0.1
TRIM3-211ENST00000532542 NPATQ14207 1427 aa14.42□□□□□ -0.1
TRIM3-211ENST00000532542 MYH16Q9H6N6 1097 aa14.42□□□□□ -0.1
TRIM3-211ENST00000532542 HECW2Q9P2P5 1572 aa14.42□□□□□ -0.1
TRIM3-211ENST00000532542 KDM5CP41229 1560 aa14.42□□□□□ -0.1
TRIM3-211ENST00000532542 TET3O43151 1660 aa14.41□□□□□ -0.1
TRIM3-211ENST00000532542 E9PSI1 815 aa14.4□□□□□ -0.1
TRIM3-211ENST00000532542 MS4A1P11836 297 aa14.4□□□□□ -0.1
TRIM3-211ENST00000532542 TXNDC2Q86VQ3 553 aa14.4□□□□□ -0.1
TRIM3-211ENST00000532542 FRAT1Q92837 279 aaPredicted RBP14.4□□□□□ -0.1
TRIM3-211ENST00000532542 SMG6Q86US8 1419 aaKnown RBP14.4□□□□□ -0.1
TRIM3-211ENST00000532542 RRP1P56182 461 aaKnown RBP14.4□□□□□ -0.1
TRIM3-211ENST00000532542 PARD3Q8TEW0 1356 aa14.39□□□□□ -0.11
TRIM3-211ENST00000532542 CDK19Q9BWU1 502 aa14.39□□□□□ -0.11
TRIM3-211ENST00000532542 MTHFSP49914 203 aa14.39□□□□□ -0.11
TRIM3-211ENST00000532542 FTSJ3Q8IY81 847 aaKnown RBP14.39□□□□□ -0.11
TRIM3-211ENST00000532542 COG3Q96JB2 828 aa14.39□□□□□ -0.11
TRIM3-211ENST00000532542 NSD3Q9BZ95 1437 aa14.39□□□□□ -0.11
TRIM3-211ENST00000532542 THEMISQ8N1K5 641 aaPredicted RBP14.38□□□□□ -0.11
TRIM3-211ENST00000532542 GGNBP2Q9H3C7 697 aa14.38□□□□□ -0.11
TRIM3-211ENST00000532542 MAGI2Q86UL8 1455 aa14.38□□□□□ -0.11
TRIM3-211ENST00000532542 RUNDC1Q96C34 613 aa14.38□□□□□ -0.11
TRIM3-211ENST00000532542 YEATS2Q9ULM3 1422 aa14.38□□□□□ -0.11
TRIM3-211ENST00000532542 PER1O15534 1290 aaPredicted RBP14.38□□□□□ -0.11
TRIM3-211ENST00000532542 CALD1Q05682 793 aaKnown RBP14.38□□□□□ -0.11
TRIM3-211ENST00000532542 NGDNQ8NEJ9 315 aaKnown RBP14.38□□□□□ -0.11
TRIM3-211ENST00000532542 LAS1LQ9Y4W2 734 aaKnown RBP14.38□□□□□ -0.11
TRIM3-211ENST00000532542 NUTM2FA1L443 756 aa14.36□□□□□ -0.11
TRIM3-211ENST00000532542 SOX12O15370 315 aa14.36□□□□□ -0.11
TRIM3-211ENST00000532542 DIAPH1O60610 1272 aaKnown RBP14.35□□□□□ -0.11
TRIM3-211ENST00000532542 AMER1Q5JTC6 1135 aaPredicted RBP14.35□□□□□ -0.11
TRIM3-211ENST00000532542 NPM2Q86SE8 214 aaKnown RBP14.35□□□□□ -0.11
TRIM3-211ENST00000532542 PUS7Q96PZ0 661 aaKnown RBP14.35□□□□□ -0.11
TRIM3-211ENST00000532542 EFCAB6Q5THR3 1501 aa14.35□□□□□ -0.11
TRIM3-211ENST00000532542 CABP1Q9NZU7 370 aa14.35□□□□□ -0.11
TRIM3-211ENST00000532542 RRP7AQ9Y3A4 280 aaKnown RBP14.35□□□□□ -0.11
TRIM3-211ENST00000532542 INO80Q9ULG1 1556 aaPredicted RBP14.35□□□□□ -0.11
TRIM3-211ENST00000532542 NINLQ9Y2I6 1382 aa14.34□□□□□ -0.11
TRIM3-211ENST00000532542 MYOM2P54296 1465 aa14.34□□□□□ -0.11
TRIM3-211ENST00000532542 ZBTB7CA1YPR0 619 aa14.34□□□□□ -0.11
TRIM3-211ENST00000532542 TNRQ92752 1358 aa14.33□□□□□ -0.11
TRIM3-211ENST00000532542 ASXL1Q8IXJ9 1541 aa14.33□□□□□ -0.11
TRIM3-211ENST00000532542 PRDM15P57071 1507 aaPredicted RBP14.33□□□□□ -0.12
TRIM3-211ENST00000532542 CDCA7LQ96GN5 454 aa14.33□□□□□ -0.12
TRIM3-211ENST00000532542 TSHZ2Q9NRE2 1034 aa14.33□□□□□ -0.12
TRIM3-211ENST00000532542 HAP1P54257 671 aaPredicted RBP14.31□□□□□ -0.12
TRIM3-211ENST00000532542 CFAP65Q6ZU64 1925 aaKnown RBP14.31□□□□□ -0.12
TRIM3-211ENST00000532542 PAK3O75914 559 aaPredicted RBP14.31□□□□□ -0.12
TRIM3-211ENST00000532542 LMOD3Q0VAK6 560 aa14.31□□□□□ -0.12
TRIM3-211ENST00000532542 LMOD2Q6P5Q4 547 aa14.31□□□□□ -0.12
TRIM3-211ENST00000532542 CHMP4BQ9H444 224 aaKnown RBP14.31□□□□□ -0.12
TRIM3-211ENST00000532542 UGGT1Q9NYU2 1555 aa14.31□□□□□ -0.12
TRIM3-211ENST00000532542 NSD2O96028 1365 aa14.3□□□□□ -0.12
TRIM3-211ENST00000532542 RIMS2Q9UQ26 1411 aa14.3□□□□□ -0.12
TRIM3-211ENST00000532542 ABCC3O15438 1527 aa14.3□□□□□ -0.12
TRIM3-211ENST00000532542 WAPLQ7Z5K2 1190 aa14.3□□□□□ -0.12
TRIM3-211ENST00000532542 ZNF692Q9BU19 519 aaPredicted RBP14.3□□□□□ -0.12
TRIM3-211ENST00000532542 RTL5Q5HYW3 569 aaPredicted RBP14.3□□□□□ -0.12
TRIM3-211ENST00000532542 UPF2Q9HAU5 1272 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms