RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 UBTFP17480 764 aaKnown RBP13.88□□□□□ -0.19
SSBP3-212ENST00000528930 ZNF579Q8NAF0 562 aaKnown RBP13.88□□□□□ -0.19
SSBP3-212ENST00000528930 MIA2Q96PC5 1412 aa13.87□□□□□ -0.19
SSBP3-212ENST00000528930 FBXO31Q5XUX0 539 aaPredicted RBP13.86□□□□□ -0.19
SSBP3-212ENST00000528930 GGT6Q6P531 493 aa13.86□□□□□ -0.19
SSBP3-212ENST00000528930 CLIP1P30622 1438 aa13.86□□□□□ -0.19
SSBP3-212ENST00000528930 SCAF11Q99590 1463 aaKnown RBP13.85□□□□□ -0.19
SSBP3-212ENST00000528930 TMEM94Q12767 1356 aa13.84□□□□□ -0.19
SSBP3-212ENST00000528930 ATAD2Q6PL18 1390 aa13.84□□□□□ -0.19
SSBP3-212ENST00000528930 NHSL1Q5SYE7 1610 aa13.84□□□□□ -0.19
SSBP3-212ENST00000528930 AHDC1Q5TGY3 1603 aaPredicted RBP13.84□□□□□ -0.19
SSBP3-212ENST00000528930 CLCN6P51797 869 aa13.84□□□□□ -0.19
SSBP3-212ENST00000528930 DIP2AQ14689 1571 aa13.83□□□□□ -0.19
SSBP3-212ENST00000528930 GALR2O43603 387 aaPredicted RBP13.83□□□□□ -0.2
SSBP3-212ENST00000528930 MEX3CQ5U5Q3 659 aaKnown RBP13.83□□□□□ -0.2
SSBP3-212ENST00000528930 SPAG9O60271 1321 aaKnown RBP13.83□□□□□ -0.2
SSBP3-212ENST00000528930 KDM5AP29375 1690 aaKnown RBP13.82□□□□□ -0.2
SSBP3-212ENST00000528930 ARHGAP23Q9P227 1491 aa13.81□□□□□ -0.2
SSBP3-212ENST00000528930 ABCC3O15438 1527 aa13.81□□□□□ -0.2
SSBP3-212ENST00000528930 SLIT1O75093 1534 aa13.81□□□□□ -0.2
SSBP3-212ENST00000528930 NWD1Q149M9 1564 aa13.81□□□□□ -0.2
SSBP3-212ENST00000528930 PRDM15P57071 1507 aaPredicted RBP13.8□□□□□ -0.2
SSBP3-212ENST00000528930 CDK11AQ9UQ88 783 aaPredicted RBP13.8□□□□□ -0.2
SSBP3-212ENST00000528930 ARHGAP35Q9NRY4 1499 aa13.8□□□□□ -0.2
SSBP3-212ENST00000528930 EP400Q96L91 3159 aa13.79□□□□□ -0.2
SSBP3-212ENST00000528930 PHF12Q96QT6 1004 aa13.78□□□□□ -0.2
SSBP3-212ENST00000528930 NKTRP30414 1462 aaKnown RBP13.78□□□□□ -0.2
SSBP3-212ENST00000528930 NUTM2BA6NNL0 878 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-212ENST00000528930 NUTM2EB1AL46 878 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-212ENST00000528930 AFF2P51816 1311 aa13.77□□□□□ -0.21
SSBP3-212ENST00000528930 NUTM2DQ5VT03 806 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-212ENST00000528930 NUTM2AQ8IVF1 878 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-212ENST00000528930 RBM6P78332 1123 aaKnown RBP13.76□□□□□ -0.21
SSBP3-212ENST00000528930 NCOA2Q15596 1464 aa13.75□□□□□ -0.21
SSBP3-212ENST00000528930 KIAA1107Q9UPP5 1409 aa13.74□□□□□ -0.21
SSBP3-212ENST00000528930 FMN1Q68DA7 1419 aa13.73□□□□□ -0.21
SSBP3-212ENST00000528930 SLAIN2Q9P270 581 aa13.72□□□□□ -0.21
SSBP3-212ENST00000528930 MSH6P52701 1360 aa13.71□□□□□ -0.21
SSBP3-212ENST00000528930 PAK3O75914 559 aaPredicted RBP13.71□□□□□ -0.21
SSBP3-212ENST00000528930 ERVK-7P63135 1459 aa13.71□□□□□ -0.21
SSBP3-212ENST00000528930 CAMSAP2Q08AD1 1489 aa13.71□□□□□ -0.21
SSBP3-212ENST00000528930 PLEKHH2Q8IVE3 1493 aa13.71□□□□□ -0.21
SSBP3-212ENST00000528930 CFAP65Q6ZU64 1925 aaKnown RBP13.7□□□□□ -0.22
SSBP3-212ENST00000528930 TET3O43151 1660 aa13.7□□□□□ -0.22
SSBP3-212ENST00000528930 LTKP29376 864 aa13.7□□□□□ -0.22
SSBP3-212ENST00000528930 CCDC125Q86Z20 511 aa13.7□□□□□ -0.22
SSBP3-212ENST00000528930 MNX1P50219 401 aaPredicted RBP13.69□□□□□ -0.22
SSBP3-212ENST00000528930 GPATCH8Q9UKJ3 1502 aaKnown RBP13.69□□□□□ -0.22
SSBP3-212ENST00000528930 CHD2O14647 1828 aaKnown RBP13.69□□□□□ -0.22
SSBP3-212ENST00000528930 BCL9LQ86UU0 1499 aa13.68□□□□□ -0.22
SSBP3-212ENST00000528930 KCNA6P17658 529 aa13.68□□□□□ -0.22
SSBP3-212ENST00000528930 DHX29Q7Z478 1369 aaKnown RBP13.68□□□□□ -0.22
SSBP3-212ENST00000528930 MAST1Q9Y2H9 1570 aa13.67□□□□□ -0.22
SSBP3-212ENST00000528930 YY1P25490 414 aa13.67□□□□□ -0.22
SSBP3-212ENST00000528930 HNRNPMP52272 730 aaKnown RBP eCLIP13.67□□□□□ -0.22
SSBP3-212ENST00000528930 QTRT2Q9H974 415 aaKnown RBP13.67□□□□□ -0.22
SSBP3-212ENST00000528930 RTEL1-TNFRSF6BF6WH68 1400 aa13.66□□□□□ -0.22
SSBP3-212ENST00000528930 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.66□□□□□ -0.22
SSBP3-212ENST00000528930 POTEB2H3BUK9 544 aa13.65□□□□□ -0.22
SSBP3-212ENST00000528930 PROSER2Q86WR7 435 aaPredicted RBP13.65□□□□□ -0.22
SSBP3-212ENST00000528930 ATP1B4Q9UN42 357 aaPredicted RBP13.65□□□□□ -0.22
SSBP3-212ENST00000528930 TXNDC2Q86VQ3 553 aa13.64□□□□□ -0.23
SSBP3-212ENST00000528930 NGLY1Q96IV0 654 aa13.64□□□□□ -0.23
SSBP3-212ENST00000528930 PIK3C2BO00750 1634 aa13.64□□□□□ -0.23
SSBP3-212ENST00000528930 WASHC2CQ9Y4E1 1318 aa13.64□□□□□ -0.23
SSBP3-212ENST00000528930 CASKIN1Q8WXD9 1431 aa13.63□□□□□ -0.23
SSBP3-212ENST00000528930 CEP152O94986 1710 aa13.62□□□□□ -0.23
SSBP3-212ENST00000528930 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
SSBP3-212ENST00000528930 SETD5Q9C0A6 1442 aa13.62□□□□□ -0.23
SSBP3-212ENST00000528930 MROH1Q8NDA8 1641 aa13.61□□□□□ -0.23
SSBP3-212ENST00000528930 ZNF777Q9ULD5 760 aaPredicted RBP13.61□□□□□ -0.23
SSBP3-212ENST00000528930 BLMP54132 1417 aaPredicted RBP13.61□□□□□ -0.23
SSBP3-212ENST00000528930 SPHKAPQ2M3C7 1700 aa13.61□□□□□ -0.23
SSBP3-212ENST00000528930 CCDC18Q5T9S5 1454 aa13.61□□□□□ -0.23
SSBP3-212ENST00000528930 KIF3BO15066 747 aa13.6□□□□□ -0.23
SSBP3-212ENST00000528930 OTUD5Q96G74 571 aa13.6□□□□□ -0.23
SSBP3-212ENST00000528930 UNC13BO14795 1591 aa13.59□□□□□ -0.23
SSBP3-212ENST00000528930 LOC105371045A0A1W2PR82 267 aa13.59□□□□□ -0.23
SSBP3-212ENST00000528930 MBD5Q9P267 1494 aa13.59□□□□□ -0.23
SSBP3-212ENST00000528930 BRWD3Q6RI45 1802 aa13.59□□□□□ -0.23
SSBP3-212ENST00000528930 NCOA3Q9Y6Q9 1424 aa13.58□□□□□ -0.24
SSBP3-212ENST00000528930 C8orf37Q96NL8 207 aa13.58□□□□□ -0.24
SSBP3-212ENST00000528930 TMEM2Q9UHN6 1383 aa13.58□□□□□ -0.24
SSBP3-212ENST00000528930 HRCP23327 699 aa13.57□□□□□ -0.24
SSBP3-212ENST00000528930 ATRNO75882 1429 aa13.56□□□□□ -0.24
SSBP3-212ENST00000528930 CEP162Q5TB80 1403 aa13.56□□□□□ -0.24
SSBP3-212ENST00000528930 FYCO1Q9BQS8 1478 aa13.56□□□□□ -0.24
SSBP3-212ENST00000528930 EID1Q9Y6B2 187 aa13.56□□□□□ -0.24
SSBP3-212ENST00000528930 ASXL1Q8IXJ9 1541 aa13.55□□□□□ -0.24
SSBP3-212ENST00000528930 MS4A3Q96HJ5 214 aa13.55□□□□□ -0.24
SSBP3-212ENST00000528930 EIF2AK4Q9P2K8 1649 aaKnown RBP13.54□□□□□ -0.24
SSBP3-212ENST00000528930 MARF1Q9Y4F3 1742 aaKnown RBP13.53□□□□□ -0.24
SSBP3-212ENST00000528930 SENP3-EIF4A1A0A087X0R7 540 aa13.53□□□□□ -0.24
SSBP3-212ENST00000528930 TSPYL2Q9H2G4 693 aaPredicted RBP13.53□□□□□ -0.24
SSBP3-212ENST00000528930 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
SSBP3-212ENST00000528930 PNPLA6Q8IY17 1366 aa13.53□□□□□ -0.24
SSBP3-212ENST00000528930 EFCAB6Q5THR3 1501 aa13.53□□□□□ -0.24
SSBP3-212ENST00000528930 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.52□□□□□ -0.25
SSBP3-212ENST00000528930 DEFB132Q7Z7B7 95 aa13.51□□□□□ -0.25
SSBP3-212ENST00000528930 TRPC5Q9UL62 973 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms