RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	MYOM3	Q5VTT5	1437 aa		11.15	□□□□□ -0.62
SPIDR-223	ENST00000524033	STRC	Q7RTU9	1775 aa		11.15	□□□□□ -0.62
SPIDR-223	ENST00000524033	TNR	Q92752	1358 aa		11.15	□□□□□ -0.63
SPIDR-223	ENST00000524033	CAMSAP1	Q5T5Y3	1602 aa		11.14	□□□□□ -0.63
SPIDR-223	ENST00000524033	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-223	ENST00000524033	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.13	□□□□□ -0.63
SPIDR-223	ENST00000524033	ANKLE2	Q86XL3	938 aa		11.13	□□□□□ -0.63
SPIDR-223	ENST00000524033	TAOK2	Q9UL54	1235 aa		11.13	□□□□□ -0.63
SPIDR-223	ENST00000524033	MROH2A	A6NES4	1674 aa		11.13	□□□□□ -0.63
SPIDR-223	ENST00000524033	CLTC	Q00610	1675 aa	Known RBP	11.13	□□□□□ -0.63
SPIDR-223	ENST00000524033	ADGB	Q8N7X0	1667 aa		11.13	□□□□□ -0.63
SPIDR-223	ENST00000524033	ARHGEF5	Q12774	1597 aa		11.12	□□□□□ -0.63
SPIDR-223	ENST00000524033	CHGA	P10645	457 aa	Known RBP	11.12	□□□□□ -0.63
SPIDR-223	ENST00000524033	PLCB2	Q00722	1185 aa		11.12	□□□□□ -0.63
SPIDR-223	ENST00000524033	TIMELESS	Q9UNS1	1208 aa		11.12	□□□□□ -0.63
SPIDR-223	ENST00000524033	PTPN23	Q9H3S7	1636 aa		11.11	□□□□□ -0.63
SPIDR-223	ENST00000524033	FXR2	P51116	673 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
SPIDR-223	ENST00000524033	A2ML1	A8K2U0	1454 aa		11.11	□□□□□ -0.63
SPIDR-223	ENST00000524033	PZP	P20742	1482 aa		11.11	□□□□□ -0.63
SPIDR-223	ENST00000524033	PLA2R1	Q13018	1463 aa		11.11	□□□□□ -0.63
SPIDR-223	ENST00000524033	KDM5D	Q9BY66	1539 aa		11.1	□□□□□ -0.63
SPIDR-223	ENST00000524033	PAK3	O75914	559 aa	Predicted RBP	11.1	□□□□□ -0.63
SPIDR-223	ENST00000524033	CHIC2	Q9UKJ5	165 aa		11.1	□□□□□ -0.63
SPIDR-223	ENST00000524033	TCOF1	Q13428	1488 aa	Known RBP	11.1	□□□□□ -0.63
SPIDR-223	ENST00000524033	GCC2	Q8IWJ2	1684 aa		11.09	□□□□□ -0.63
SPIDR-223	ENST00000524033	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.09	□□□□□ -0.63
SPIDR-223	ENST00000524033	UBAP1L	F5GYI3	381 aa		11.09	□□□□□ -0.63
SPIDR-223	ENST00000524033	PYGB	P11216	843 aa		11.09	□□□□□ -0.63
SPIDR-223	ENST00000524033	BBX	Q8WY36	941 aa	Predicted RBP	11.09	□□□□□ -0.63
SPIDR-223	ENST00000524033	FGD6	Q6ZV73	1430 aa		11.09	□□□□□ -0.63
SPIDR-223	ENST00000524033	KIF15	Q9NS87	1388 aa		11.08	□□□□□ -0.64
SPIDR-223	ENST00000524033	PPP1R15A	O75807	674 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-223	ENST00000524033	HAP1	P54257	671 aa	Predicted RBP	11.08	□□□□□ -0.64
SPIDR-223	ENST00000524033	LTBP4	Q8N2S1	1624 aa		11.08	□□□□□ -0.64
SPIDR-223	ENST00000524033	ABCC5	O15440	1437 aa		11.08	□□□□□ -0.64
SPIDR-223	ENST00000524033	RIOK3	O14730	519 aa	Known RBP	11.07	□□□□□ -0.64
SPIDR-223	ENST00000524033	TSHZ2	Q9NRE2	1034 aa		11.07	□□□□□ -0.64
SPIDR-223	ENST00000524033	FAM135A	Q9P2D6	1515 aa		11.07	□□□□□ -0.64
SPIDR-223	ENST00000524033	NLRP1	Q9C000	1473 aa		11.06	□□□□□ -0.64
SPIDR-223	ENST00000524033	MYO3A	Q8NEV4	1616 aa		11.06	□□□□□ -0.64
SPIDR-223	ENST00000524033	FAM50A	Q14320	339 aa	Known RBP	11.06	□□□□□ -0.64
SPIDR-223	ENST00000524033	PIP4P2	Q8N4L2	257 aa		11.06	□□□□□ -0.64
SPIDR-223	ENST00000524033	HFM1	A2PYH4	1435 aa		11.06	□□□□□ -0.64
SPIDR-223	ENST00000524033	CFAP44	Q96MT7	982 aa		11.05	□□□□□ -0.64
SPIDR-223	ENST00000524033	MAST1	Q9Y2H9	1570 aa		11.05	□□□□□ -0.64
SPIDR-223	ENST00000524033	DNMT1	P26358	1616 aa	Known RBP	11.05	□□□□□ -0.64
SPIDR-223	ENST00000524033	IQSEC2	Q5JU85	1478 aa		11.05	□□□□□ -0.64
SPIDR-223	ENST00000524033	DUOX2	Q9NRD8	1548 aa		11.04	□□□□□ -0.64
SPIDR-223	ENST00000524033	ANKRD30A	Q9BXX3	1397 aa		11.04	□□□□□ -0.64
SPIDR-223	ENST00000524033	ABCC3	O15438	1527 aa		11.04	□□□□□ -0.64
SPIDR-223	ENST00000524033	KANK1	Q14678	1352 aa		11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	DAPK1	P53355	1430 aa		11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	CCER2	I3L3R5	266 aa		11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	TOM1	O60784	492 aa		11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	UGGT1	Q9NYU2	1555 aa		11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	DISP3	Q9P2K9	1392 aa		11.03	□□□□□ -0.64
SPIDR-223	ENST00000524033	ERBIN	Q96RT1	1412 aa		11.02	□□□□□ -0.64
SPIDR-223	ENST00000524033	CHRM1	P11229	460 aa	Predicted RBP	11.02	□□□□□ -0.65
SPIDR-223	ENST00000524033	PIP4K2B	P78356	416 aa		11.02	□□□□□ -0.65
SPIDR-223	ENST00000524033	TXNDC2	Q86VQ3	553 aa		11.02	□□□□□ -0.65
SPIDR-223	ENST00000524033	EID1	Q9Y6B2	187 aa		11.02	□□□□□ -0.65
SPIDR-223	ENST00000524033	ZNF142	P52746	1687 aa	Predicted RBP	11.01	□□□□□ -0.65
SPIDR-223	ENST00000524033	SHANK2	Q9UPX8	1470 aa		11.01	□□□□□ -0.65
SPIDR-223	ENST00000524033	RNF25	Q96BH1	459 aa	Predicted RBP	11.01	□□□□□ -0.65
SPIDR-223	ENST00000524033	NPHP4	O75161	1426 aa	Predicted RBP	11.01	□□□□□ -0.65
SPIDR-223	ENST00000524033	ARHGAP31	Q2M1Z3	1444 aa		11.01	□□□□□ -0.65
SPIDR-223	ENST00000524033	ERVK-7	P63135	1459 aa		11	□□□□□ -0.65
SPIDR-223	ENST00000524033	VGF	O15240	615 aa	Predicted RBP	11	□□□□□ -0.65
SPIDR-223	ENST00000524033	LTK	P29376	864 aa		11	□□□□□ -0.65
SPIDR-223	ENST00000524033	ITGAE	P38570	1179 aa		11	□□□□□ -0.65
SPIDR-223	ENST00000524033	IDI1	Q13907	227 aa		11	□□□□□ -0.65
SPIDR-223	ENST00000524033	SIN3A	Q96ST3	1273 aa		11	□□□□□ -0.65
SPIDR-223	ENST00000524033	NAIP	Q13075	1403 aa		11	□□□□□ -0.65
SPIDR-223	ENST00000524033	RNF17	Q9BXT8	1623 aa	Known RBP	10.99	□□□□□ -0.65
SPIDR-223	ENST00000524033	STK25	O00506	426 aa		10.99	□□□□□ -0.65
SPIDR-223	ENST00000524033	MED14	O60244	1454 aa		10.99	□□□□□ -0.65
SPIDR-223	ENST00000524033	SPATA31D1	Q6ZQQ2	1576 aa		10.98	□□□□□ -0.65
SPIDR-223	ENST00000524033	EIF2AK4	Q9P2K8	1649 aa	Known RBP	10.98	□□□□□ -0.65
SPIDR-223	ENST00000524033	POLR1A	O95602	1720 aa	Predicted RBP	10.98	□□□□□ -0.65
SPIDR-223	ENST00000524033	HS6ST3	Q8IZP7	471 aa		10.97	□□□□□ -0.65
SPIDR-223	ENST00000524033	SPRYD3	Q8NCJ5	442 aa		10.97	□□□□□ -0.65
SPIDR-223	ENST00000524033	SLC52A1	Q9NWF4	448 aa		10.97	□□□□□ -0.65
SPIDR-223	ENST00000524033	MROH1	Q8NDA8	1641 aa		10.96	□□□□□ -0.65
SPIDR-223	ENST00000524033	NEURL4	Q96JN8	1562 aa		10.96	□□□□□ -0.65
SPIDR-223	ENST00000524033	CPS1	P31327	1500 aa		10.96	□□□□□ -0.65
SPIDR-223	ENST00000524033	HSPA1L	P34931	641 aa		10.96	□□□□□ -0.65
SPIDR-223	ENST00000524033	ILDR2	Q71H61	639 aa		10.96	□□□□□ -0.65
SPIDR-223	ENST00000524033	TMEM2	Q9UHN6	1383 aa		10.95	□□□□□ -0.66
SPIDR-223	ENST00000524033	DDX10	Q13206	875 aa	Known RBP	10.95	□□□□□ -0.66
SPIDR-223	ENST00000524033	ANKRD50	Q9ULJ7	1429 aa		10.94	□□□□□ -0.66
SPIDR-223	ENST00000524033	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.94	□□□□□ -0.66
SPIDR-223	ENST00000524033	BCAN	Q96GW7	911 aa		10.94	□□□□□ -0.66
SPIDR-223	ENST00000524033	ZC3H13	Q5T200	1668 aa	Known RBP	10.94	□□□□□ -0.66
SPIDR-223	ENST00000524033	PRDM15	P57071	1507 aa	Predicted RBP	10.94	□□□□□ -0.66
SPIDR-223	ENST00000524033	SCAF11	Q99590	1463 aa	Known RBP	10.93	□□□□□ -0.66
SPIDR-223	ENST00000524033	SLC26A8	Q96RN1	970 aa		10.93	□□□□□ -0.66
SPIDR-223	ENST00000524033	STK24	Q9Y6E0	443 aa		10.93	□□□□□ -0.66
SPIDR-223	ENST00000524033	DEPDC5	O75140	1603 aa		10.93	□□□□□ -0.66
SPIDR-223	ENST00000524033	ADGRL2	O95490	1459 aa		10.93	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms