RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 CLTCL1P53675 1640 aa12.3□□□□□ -0.44
PDGFRA-208ENST00000509490 ERCC6L2Q5T890 1561 aa12.29□□□□□ -0.44
PDGFRA-208ENST00000509490 ASXL1Q8IXJ9 1541 aa12.28□□□□□ -0.44
PDGFRA-208ENST00000509490 ZNF521Q96K83 1311 aa12.28□□□□□ -0.44
PDGFRA-208ENST00000509490 ANP32AP39687 249 aaKnown RBP12.27□□□□□ -0.44
PDGFRA-208ENST00000509490 NCBP3Q53F19 620 aaKnown RBP12.27□□□□□ -0.44
PDGFRA-208ENST00000509490 NRXN1Q9ULB1 1477 aa12.27□□□□□ -0.45
PDGFRA-208ENST00000509490 LMTK2Q8IWU2 1503 aa12.27□□□□□ -0.45
PDGFRA-208ENST00000509490 KDM5AP29375 1690 aaKnown RBP12.27□□□□□ -0.45
PDGFRA-208ENST00000509490 EFCAB2Q5VUJ9 269 aa12.27□□□□□ -0.45
PDGFRA-208ENST00000509490 MROH1Q8NDA8 1641 aa12.26□□□□□ -0.45
PDGFRA-208ENST00000509490 TRAPPC8Q9Y2L5 1435 aa12.26□□□□□ -0.45
PDGFRA-208ENST00000509490 POLR3GLQ9BT43 218 aa12.26□□□□□ -0.45
PDGFRA-208ENST00000509490 CDCA8Q53HL2 280 aa12.26□□□□□ -0.45
PDGFRA-208ENST00000509490 MAP3K4Q9Y6R4 1608 aa12.25□□□□□ -0.45
PDGFRA-208ENST00000509490 PANK3Q9H999 370 aa12.25□□□□□ -0.45
PDGFRA-208ENST00000509490 EXOC6Q8TAG9 804 aa12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 SBNO2Q9Y2G9 1366 aa12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 NGEFQ8N5V2 710 aa12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 SETBP1Q9Y6X0 1596 aa12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 ATP7AQ04656 1500 aa12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 AMER1Q5JTC6 1135 aaPredicted RBP12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 BACH2Q9BYV9 841 aa12.24□□□□□ -0.45
PDGFRA-208ENST00000509490 EIF3AQ14152 1382 aaKnown RBP12.23□□□□□ -0.45
PDGFRA-208ENST00000509490 TRMT2AQ8IZ69 625 aaKnown RBP12.22□□□□□ -0.45
PDGFRA-208ENST00000509490 PAK3O75914 559 aaPredicted RBP12.22□□□□□ -0.45
PDGFRA-208ENST00000509490 USP32Q8NFA0 1604 aa12.22□□□□□ -0.45
PDGFRA-208ENST00000509490 KDM2BQ8NHM5 1336 aa12.22□□□□□ -0.45
PDGFRA-208ENST00000509490 ABCA6Q8N139 1617 aa12.21□□□□□ -0.45
PDGFRA-208ENST00000509490 EFCAB6Q5THR3 1501 aa12.21□□□□□ -0.45
PDGFRA-208ENST00000509490 ZC3H13Q5T200 1668 aaKnown RBP12.2□□□□□ -0.46
PDGFRA-208ENST00000509490 PDE4AP27815 886 aa12.2□□□□□ -0.46
PDGFRA-208ENST00000509490 PPP2R1AP30153 589 aa12.2□□□□□ -0.46
PDGFRA-208ENST00000509490 FANCAO15360 1455 aa12.2□□□□□ -0.46
PDGFRA-208ENST00000509490 KIF1BO60333 1816 aa12.2□□□□□ -0.46
PDGFRA-208ENST00000509490 USP35Q9P2H5 1018 aa12.19□□□□□ -0.46
PDGFRA-208ENST00000509490 ZBTB47Q9UFB7 747 aaPredicted RBP12.19□□□□□ -0.46
PDGFRA-208ENST00000509490 RGL3Q3MIN7 710 aa12.18□□□□□ -0.46
PDGFRA-208ENST00000509490 PLEKHH1Q9ULM0 1364 aa12.18□□□□□ -0.46
PDGFRA-208ENST00000509490 CDCA7LQ96GN5 454 aa12.18□□□□□ -0.46
PDGFRA-208ENST00000509490 ERVK-7P63135 1459 aa12.18□□□□□ -0.46
PDGFRA-208ENST00000509490 DUSP27Q5VZP5 1158 aa12.18□□□□□ -0.46
PDGFRA-208ENST00000509490 ADGRB3O60242 1522 aa12.18□□□□□ -0.46
PDGFRA-208ENST00000509490 SPAG9O60271 1321 aaKnown RBP12.17□□□□□ -0.46
PDGFRA-208ENST00000509490 KANK1Q14678 1352 aa12.16□□□□□ -0.46
PDGFRA-208ENST00000509490 DEKP35659 375 aaKnown RBP12.16□□□□□ -0.46
PDGFRA-208ENST00000509490 NINLQ9Y2I6 1382 aa12.16□□□□□ -0.46
PDGFRA-208ENST00000509490 VIRMAQ69YN4 1812 aaKnown RBP12.16□□□□□ -0.46
PDGFRA-208ENST00000509490 ADAMTS8Q9UP79 889 aa12.15□□□□□ -0.46
PDGFRA-208ENST00000509490 KNSTRNQ9Y448 316 aa12.15□□□□□ -0.46
PDGFRA-208ENST00000509490 CC2D1BQ5T0F9 858 aaKnown RBP12.15□□□□□ -0.46
PDGFRA-208ENST00000509490 CENPQQ7L2Z9 268 aaPredicted RBP12.15□□□□□ -0.46
PDGFRA-208ENST00000509490 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.15□□□□□ -0.46
PDGFRA-208ENST00000509490 PPRC1Q5VV67 1664 aaKnown RBP12.15□□□□□ -0.46
PDGFRA-208ENST00000509490 MROH2AA6NES4 1674 aa12.15□□□□□ -0.47
PDGFRA-208ENST00000509490 KIDINS220Q9ULH0 1771 aa12.14□□□□□ -0.47
PDGFRA-208ENST00000509490 SLFN5Q08AF3 891 aa12.14□□□□□ -0.47
PDGFRA-208ENST00000509490 CRBNQ96SW2 442 aa12.14□□□□□ -0.47
PDGFRA-208ENST00000509490 POLR3AO14802 1390 aaPredicted RBP12.14□□□□□ -0.47
PDGFRA-208ENST00000509490 NKTRP30414 1462 aaKnown RBP12.13□□□□□ -0.47
PDGFRA-208ENST00000509490 CFAP74Q9C0B2 1584 aa12.13□□□□□ -0.47
PDGFRA-208ENST00000509490 SHPRHQ149N8 1683 aa12.13□□□□□ -0.47
PDGFRA-208ENST00000509490 PPLO60437 1756 aa12.13□□□□□ -0.47
PDGFRA-208ENST00000509490 ZMYM3Q14202 1370 aa12.13□□□□□ -0.47
PDGFRA-208ENST00000509490 DDRGK1Q96HY6 314 aa12.13□□□□□ -0.47
PDGFRA-208ENST00000509490 GOLGA2Q08379 1002 aa12.12□□□□□ -0.47
PDGFRA-208ENST00000509490 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.12□□□□□ -0.47
PDGFRA-208ENST00000509490 PUS7Q96PZ0 661 aaKnown RBP12.11□□□□□ -0.47
PDGFRA-208ENST00000509490 ADGRB1O14514 1584 aa12.11□□□□□ -0.47
PDGFRA-208ENST00000509490 PPM1GO15355 546 aaPredicted RBP12.1□□□□□ -0.47
PDGFRA-208ENST00000509490 CNGB1Q14028 1251 aaPredicted RBP12.1□□□□□ -0.47
PDGFRA-208ENST00000509490 WDR43Q15061 677 aaKnown RBP eCLIP12.1□□□□□ -0.47
PDGFRA-208ENST00000509490 ZNF518AQ6AHZ1 1483 aa12.1□□□□□ -0.47
PDGFRA-208ENST00000509490 ADGRL1O94910 1474 aa12.1□□□□□ -0.47
PDGFRA-208ENST00000509490 IQSEC2Q5JU85 1478 aa12.1□□□□□ -0.47
PDGFRA-208ENST00000509490 AAMPQ13685 434 aa12.09□□□□□ -0.47
PDGFRA-208ENST00000509490 HECW2Q9P2P5 1572 aa12.09□□□□□ -0.47
PDGFRA-208ENST00000509490 PIK3C2BO00750 1634 aa12.09□□□□□ -0.47
PDGFRA-208ENST00000509490 E9PSI1 815 aa12.08□□□□□ -0.48
PDGFRA-208ENST00000509490 MLH3Q9UHC1 1453 aa12.08□□□□□ -0.48
PDGFRA-208ENST00000509490 QRICH2Q9H0J4 1663 aa12.07□□□□□ -0.48
PDGFRA-208ENST00000509490 RTL5Q5HYW3 569 aaPredicted RBP12.06□□□□□ -0.48
PDGFRA-208ENST00000509490 FRMPD1Q5SYB0 1578 aa12.06□□□□□ -0.48
PDGFRA-208ENST00000509490 PLIN1O60240 522 aa12.06□□□□□ -0.48
PDGFRA-208ENST00000509490 PDE3AQ14432 1141 aa12.06□□□□□ -0.48
PDGFRA-208ENST00000509490 C20orf194Q5TEA3 1177 aa12.06□□□□□ -0.48
PDGFRA-208ENST00000509490 AFAP1Q8N556 730 aa12.06□□□□□ -0.48
PDGFRA-208ENST00000509490 RPGRIP1LQ68CZ1 1315 aa12.05□□□□□ -0.48
PDGFRA-208ENST00000509490 ADGRB2O60241 1585 aa12.05□□□□□ -0.48
PDGFRA-208ENST00000509490 UGGT1Q9NYU2 1555 aa12.05□□□□□ -0.48
PDGFRA-208ENST00000509490 FAM161AQ3B820 660 aa12.05□□□□□ -0.48
PDGFRA-208ENST00000509490 C8orf34Q49A92 452 aa12.04□□□□□ -0.48
PDGFRA-208ENST00000509490 NSD2O96028 1365 aa12.04□□□□□ -0.48
PDGFRA-208ENST00000509490 SALL2Q9Y467 1007 aaPredicted RBP12.03□□□□□ -0.48
PDGFRA-208ENST00000509490 CARD14Q9BXL6 1004 aa12.03□□□□□ -0.48
PDGFRA-208ENST00000509490 CGNL1Q0VF96 1302 aa12.03□□□□□ -0.48
PDGFRA-208ENST00000509490 CCDC27Q2M243 656 aa12.03□□□□□ -0.48
PDGFRA-208ENST00000509490 ARHGEF28Q8N1W1 1705 aaKnown RBP12.02□□□□□ -0.49
PDGFRA-208ENST00000509490 CAMSAP1Q5T5Y3 1602 aa12.02□□□□□ -0.49
PDGFRA-208ENST00000509490 ZFYVE9O95405 1425 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms