RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 MYBBP1AQ9BQG0 1328 aaKnown RBP15.49■□□□□ 0.07
RFC4-214ENST00000494047 PRAG1Q86YV5 1406 aa15.49■□□□□ 0.07
RFC4-214ENST00000494047 PRDM15P57071 1507 aaPredicted RBP15.49■□□□□ 0.07
RFC4-214ENST00000494047 NEURL4Q96JN8 1562 aa15.49■□□□□ 0.07
RFC4-214ENST00000494047 FAM9BQ8IZU0 186 aa15.49■□□□□ 0.07
RFC4-214ENST00000494047 RNF17Q9BXT8 1623 aaKnown RBP15.48■□□□□ 0.07
RFC4-214ENST00000494047 RNF123Q5XPI4 1314 aa15.47■□□□□ 0.07
RFC4-214ENST00000494047 LRPPRCP42704 1394 aaKnown RBP15.47■□□□□ 0.07
RFC4-214ENST00000494047 SLC24A1O60721 1099 aa15.47■□□□□ 0.07
RFC4-214ENST00000494047 PDE3BQ13370 1112 aa15.47■□□□□ 0.07
RFC4-214ENST00000494047 ZC3H13Q5T200 1668 aaKnown RBP15.44■□□□□ 0.06
RFC4-214ENST00000494047 TMC1Q8TDI8 760 aa15.44■□□□□ 0.06
RFC4-214ENST00000494047 HSPA2P54652 639 aa15.43■□□□□ 0.06
RFC4-214ENST00000494047 DMRT2Q9Y5R5 561 aa15.43■□□□□ 0.06
RFC4-214ENST00000494047 NLRP13Q86W25 1043 aa15.42■□□□□ 0.06
RFC4-214ENST00000494047 PARD3Q8TEW0 1356 aa15.41■□□□□ 0.06
RFC4-214ENST00000494047 KIAA1210Q9ULL0 1709 aa15.39■□□□□ 0.05
RFC4-214ENST00000494047 ZNF326Q5BKZ1 582 aaKnown RBP15.39■□□□□ 0.05
RFC4-214ENST00000494047 ERICH6Q7L0X2 663 aa15.39■□□□□ 0.05
RFC4-214ENST00000494047 PNISRQ8TF01 805 aaKnown RBP15.39■□□□□ 0.05
RFC4-214ENST00000494047 KANK1Q14678 1352 aa15.39■□□□□ 0.05
RFC4-214ENST00000494047 ABCC3O15438 1527 aa15.39■□□□□ 0.05
RFC4-214ENST00000494047 ZNF142P52746 1687 aaPredicted RBP15.39■□□□□ 0.05
RFC4-214ENST00000494047 CDCA8Q53HL2 280 aa15.38■□□□□ 0.05
RFC4-214ENST00000494047 TRPM2O94759 1503 aa15.38■□□□□ 0.05
RFC4-214ENST00000494047 DEPDC5O75140 1603 aa15.38■□□□□ 0.05
RFC4-214ENST00000494047 DCAF11Q8TEB1 546 aa15.37■□□□□ 0.05
RFC4-214ENST00000494047 MROH1Q8NDA8 1641 aa15.37■□□□□ 0.05
RFC4-214ENST00000494047 MYO3AQ8NEV4 1616 aa15.37■□□□□ 0.05
RFC4-214ENST00000494047 CEP152O94986 1710 aa15.37■□□□□ 0.05
RFC4-214ENST00000494047 TNRQ92752 1358 aa15.37■□□□□ 0.05
RFC4-214ENST00000494047 CEP170BQ9Y4F5 1589 aaPredicted RBP15.36■□□□□ 0.05
RFC4-214ENST00000494047 ARHGAP31Q2M1Z3 1444 aa15.36■□□□□ 0.05
RFC4-214ENST00000494047 CCDC184Q52MB2 194 aa15.36■□□□□ 0.05
RFC4-214ENST00000494047 SPHKAPQ2M3C7 1700 aa15.35■□□□□ 0.05
RFC4-214ENST00000494047 TET3O43151 1660 aa15.35■□□□□ 0.05
RFC4-214ENST00000494047 A2ML1A8K2U0 1454 aa15.35■□□□□ 0.05
RFC4-214ENST00000494047 NLRP1Q9C000 1473 aa15.35■□□□□ 0.05
RFC4-214ENST00000494047 ST20-MTHFSA0A0A6YYL1 179 aa15.35■□□□□ 0.05
RFC4-214ENST00000494047 SYNMO15061 1565 aa15.34■□□□□ 0.05
RFC4-214ENST00000494047 PLA2R1Q13018 1463 aa15.34■□□□□ 0.05
RFC4-214ENST00000494047 STRCQ7RTU9 1775 aa15.34■□□□□ 0.05
RFC4-214ENST00000494047 EIF3AQ14152 1382 aaKnown RBP15.34■□□□□ 0.05
RFC4-214ENST00000494047 TMF1P82094 1093 aa15.34■□□□□ 0.05
RFC4-214ENST00000494047 CAMSAP1Q5T5Y3 1602 aa15.34■□□□□ 0.05
RFC4-214ENST00000494047 PTPRTO14522 1441 aa15.33■□□□□ 0.04
RFC4-214ENST00000494047 IQGAP1P46940 1657 aa15.33■□□□□ 0.04
RFC4-214ENST00000494047 FBXO31Q5XUX0 539 aaPredicted RBP15.33■□□□□ 0.04
RFC4-214ENST00000494047 SPATA31D1Q6ZQQ2 1576 aa15.32■□□□□ 0.04
RFC4-214ENST00000494047 LMTK2Q8IWU2 1503 aa15.32■□□□□ 0.04
RFC4-214ENST00000494047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.32■□□□□ 0.049e-7■■□□□ 11.9
RFC4-214ENST00000494047 BLMP54132 1417 aaPredicted RBP15.32■□□□□ 0.04
RFC4-214ENST00000494047 VWDEQ8N2E2 1590 aa15.31■□□□□ 0.04
RFC4-214ENST00000494047 THEMISQ8N1K5 641 aaPredicted RBP15.3■□□□□ 0.04
RFC4-214ENST00000494047 NPC1L1Q9UHC9 1359 aa15.3■□□□□ 0.04
RFC4-214ENST00000494047 ERVK-7P63135 1459 aa15.29■□□□□ 0.04
RFC4-214ENST00000494047 CFAP65Q6ZU64 1925 aaKnown RBP15.29■□□□□ 0.04
RFC4-214ENST00000494047 CCDC136Q96JN2 1154 aa15.29■□□□□ 0.04
RFC4-214ENST00000494047 POLR3GLQ9BT43 218 aa15.29■□□□□ 0.04
RFC4-214ENST00000494047 NGEFQ8N5V2 710 aa15.27■□□□□ 0.04
RFC4-214ENST00000494047 SCAF11Q99590 1463 aaKnown RBP15.27■□□□□ 0.03
RFC4-214ENST00000494047 UGGT1Q9NYU2 1555 aa15.27■□□□□ 0.03
RFC4-214ENST00000494047 KDM2AQ9Y2K7 1162 aa15.26■□□□□ 0.03
RFC4-214ENST00000494047 MYOM2P54296 1465 aa15.25■□□□□ 0.03
RFC4-214ENST00000494047 ANP32AP39687 249 aaKnown RBP15.24■□□□□ 0.03
RFC4-214ENST00000494047 EFCAB6Q5THR3 1501 aa15.24■□□□□ 0.03
RFC4-214ENST00000494047 IRX6P78412 446 aaPredicted RBP15.24■□□□□ 0.03
RFC4-214ENST00000494047 ANKLE2Q86XL3 938 aa15.24■□□□□ 0.03
RFC4-214ENST00000494047 KDM5AP29375 1690 aaKnown RBP15.23■□□□□ 0.03
RFC4-214ENST00000494047 RRP1P56182 461 aaKnown RBP15.23■□□□□ 0.03
RFC4-214ENST00000494047 PIK3C2GO75747 1445 aa15.22■□□□□ 0.03
RFC4-214ENST00000494047 NCKAP5LQ9HCH0 1330 aa15.22■□□□□ 0.03
RFC4-214ENST00000494047 PER1O15534 1290 aaPredicted RBP15.22■□□□□ 0.03
RFC4-214ENST00000494047 TESK2Q96S53 571 aa15.22■□□□□ 0.03
RFC4-214ENST00000494047 SLC52A1Q9NWF4 448 aa15.22■□□□□ 0.03
RFC4-214ENST00000494047 TCERG1O14776 1098 aaKnown RBP15.21■□□□□ 0.02
RFC4-214ENST00000494047 MS4A1P11836 297 aa15.21■□□□□ 0.02
RFC4-214ENST00000494047 B4GALNT3Q6L9W6 998 aa15.21■□□□□ 0.02
RFC4-214ENST00000494047 RCAN3Q9UKA8 241 aa15.21■□□□□ 0.02
RFC4-214ENST00000494047 KIF1BO60333 1816 aa15.2■□□□□ 0.02
RFC4-214ENST00000494047 NOS1P29475 1434 aa15.2■□□□□ 0.02
RFC4-214ENST00000494047 CERKQ8TCT0 537 aa15.2■□□□□ 0.02
RFC4-214ENST00000494047 FBXO41Q8TF61 875 aa15.2■□□□□ 0.02
RFC4-214ENST00000494047 ASXL1Q8IXJ9 1541 aa15.2■□□□□ 0.02
RFC4-214ENST00000494047 SBNO2Q9Y2G9 1366 aa15.19■□□□□ 0.02
RFC4-214ENST00000494047 UBR1Q8IWV7 1749 aa15.19■□□□□ 0.02
RFC4-214ENST00000494047 MED14O60244 1454 aa15.18■□□□□ 0.02
RFC4-214ENST00000494047 STAG3Q9UJ98 1225 aa15.18■□□□□ 0.02
RFC4-214ENST00000494047 CLTCL1P53675 1640 aa15.18■□□□□ 0.02
RFC4-214ENST00000494047 DISP3Q9P2K9 1392 aa15.18■□□□□ 0.02
RFC4-214ENST00000494047 SETBP1Q9Y6X0 1596 aa15.17■□□□□ 0.02
RFC4-214ENST00000494047 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.16■□□□□ 0.02
RFC4-214ENST00000494047 KNSTRNQ9Y448 316 aa15.16■□□□□ 0.02
RFC4-214ENST00000494047 IFT172Q9UG01 1749 aa15.16■□□□□ 0.02
RFC4-214ENST00000494047 SLIT1O75093 1534 aa15.16■□□□□ 0.02
RFC4-214ENST00000494047 IDI1Q13907 227 aa15.15■□□□□ 0.02
RFC4-214ENST00000494047 NOP58Q9Y2X3 529 aaKnown RBP15.15■□□□□ 0.02
RFC4-214ENST00000494047 EID1Q9Y6B2 187 aa15.15■□□□□ 0.02
RFC4-214ENST00000494047 IQSEC2Q5JU85 1478 aa15.15■□□□□ 0.02
RFC4-214ENST00000494047 PIK3C2BO00750 1634 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms