RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 PTPN23Q9H3S7 1636 aa11.46□□□□□ -0.57
CLDN1-202ENST00000490800 ABCC3O15438 1527 aa11.46□□□□□ -0.57
CLDN1-202ENST00000490800 UBAP1LF5GYI3 381 aa11.46□□□□□ -0.57
CLDN1-202ENST00000490800 NLRP1Q9C000 1473 aa11.45□□□□□ -0.58
CLDN1-202ENST00000490800 ANKRD30AQ9BXX3 1397 aa11.44□□□□□ -0.58
CLDN1-202ENST00000490800 RNF17Q9BXT8 1623 aaKnown RBP11.44□□□□□ -0.58
CLDN1-202ENST00000490800 UGGT1Q9NYU2 1555 aa11.44□□□□□ -0.58
CLDN1-202ENST00000490800 IQSEC2Q5JU85 1478 aa11.44□□□□□ -0.58
CLDN1-202ENST00000490800 SHANK2Q9UPX8 1470 aa11.44□□□□□ -0.58
CLDN1-202ENST00000490800 MROH1Q8NDA8 1641 aa11.43□□□□□ -0.58
CLDN1-202ENST00000490800 EIF2AK4Q9P2K8 1649 aaKnown RBP11.43□□□□□ -0.58
CLDN1-202ENST00000490800 ERBINQ96RT1 1412 aa11.43□□□□□ -0.58
CLDN1-202ENST00000490800 RGL2O15211 777 aa11.42□□□□□ -0.58
CLDN1-202ENST00000490800 ERVK-7P63135 1459 aa11.42□□□□□ -0.58
CLDN1-202ENST00000490800 RRBP1Q9P2E9 1410 aaKnown RBP11.42□□□□□ -0.58
CLDN1-202ENST00000490800 KANK1Q14678 1352 aa11.41□□□□□ -0.58
CLDN1-202ENST00000490800 SPATA31D1Q6ZQQ2 1576 aa11.41□□□□□ -0.58
CLDN1-202ENST00000490800 NPHP4O75161 1426 aaPredicted RBP11.41□□□□□ -0.58
CLDN1-202ENST00000490800 ARHGAP31Q2M1Z3 1444 aa11.41□□□□□ -0.58
CLDN1-202ENST00000490800 LTKP29376 864 aa11.4□□□□□ -0.58
CLDN1-202ENST00000490800 TXNDC2Q86VQ3 553 aa11.4□□□□□ -0.58
CLDN1-202ENST00000490800 NEURL4Q96JN8 1562 aa11.4□□□□□ -0.58
CLDN1-202ENST00000490800 ZC3H13Q5T200 1668 aaKnown RBP11.4□□□□□ -0.59
CLDN1-202ENST00000490800 CEP152O94986 1710 aa11.39□□□□□ -0.59
CLDN1-202ENST00000490800 NUBP1P53384 320 aa11.39□□□□□ -0.59
CLDN1-202ENST00000490800 IDI1Q13907 227 aa11.39□□□□□ -0.59
CLDN1-202ENST00000490800 CFAP65Q6ZU64 1925 aaKnown RBP11.39□□□□□ -0.59
CLDN1-202ENST00000490800 MED14O60244 1454 aa11.38□□□□□ -0.59
CLDN1-202ENST00000490800 CROCC2H7BZ55 1655 aa11.38□□□□□ -0.59
CLDN1-202ENST00000490800 DISP3Q9P2K9 1392 aa11.38□□□□□ -0.59
CLDN1-202ENST00000490800 PRDM15P57071 1507 aaPredicted RBP11.37□□□□□ -0.59
CLDN1-202ENST00000490800 TOM1O60784 492 aa11.37□□□□□ -0.59
CLDN1-202ENST00000490800 MNX1P50219 401 aaPredicted RBP11.37□□□□□ -0.59
CLDN1-202ENST00000490800 PIP4K2BP78356 416 aa11.37□□□□□ -0.59
CLDN1-202ENST00000490800 EID1Q9Y6B2 187 aa11.37□□□□□ -0.59
CLDN1-202ENST00000490800 POLR1AO95602 1720 aaPredicted RBP11.36□□□□□ -0.59
CLDN1-202ENST00000490800 ITGAEP38570 1179 aa11.36□□□□□ -0.59
CLDN1-202ENST00000490800 PLCB2Q00722 1185 aa11.36□□□□□ -0.59
CLDN1-202ENST00000490800 GSE1Q14687 1217 aa11.36□□□□□ -0.59
CLDN1-202ENST00000490800 DCAF8Q5TAQ9 597 aa11.36□□□□□ -0.59
CLDN1-202ENST00000490800 ANKRD50Q9ULJ7 1429 aa11.35□□□□□ -0.59
CLDN1-202ENST00000490800 ADGRL2O95490 1459 aa11.35□□□□□ -0.59
CLDN1-202ENST00000490800 DEPDC5O75140 1603 aa11.35□□□□□ -0.59
CLDN1-202ENST00000490800 CPS1P31327 1500 aa11.35□□□□□ -0.59
CLDN1-202ENST00000490800 VWDEQ8N2E2 1590 aa11.34□□□□□ -0.59
CLDN1-202ENST00000490800 ILDR2Q71H61 639 aa11.34□□□□□ -0.59
CLDN1-202ENST00000490800 FAM212AQ96EL1 285 aa11.34□□□□□ -0.59
CLDN1-202ENST00000490800 LMTK2Q8IWU2 1503 aa11.34□□□□□ -0.59
CLDN1-202ENST00000490800 TMEM2Q9UHN6 1383 aa11.33□□□□□ -0.6
CLDN1-202ENST00000490800 HSPA1LP34931 641 aa11.33□□□□□ -0.6
CLDN1-202ENST00000490800 SLC52A1Q9NWF4 448 aa11.33□□□□□ -0.6
CLDN1-202ENST00000490800 SCAF11Q99590 1463 aaKnown RBP11.32□□□□□ -0.6
CLDN1-202ENST00000490800 ARHGAP23Q9P227 1491 aa11.32□□□□□ -0.6
CLDN1-202ENST00000490800 UBR1Q8IWV7 1749 aa11.32□□□□□ -0.6
CLDN1-202ENST00000490800 CHADLQ6NUI6 762 aa11.32□□□□□ -0.6
CLDN1-202ENST00000490800 SLIT1O75093 1534 aa11.31□□□□□ -0.6
CLDN1-202ENST00000490800 IQGAP1P46940 1657 aa11.31□□□□□ -0.6
CLDN1-202ENST00000490800 SLC26A8Q96RN1 970 aa11.31□□□□□ -0.6
CLDN1-202ENST00000490800 NOS1P29475 1434 aa11.31□□□□□ -0.6
CLDN1-202ENST00000490800 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
CLDN1-202ENST00000490800 BCANQ96GW7 911 aa11.3□□□□□ -0.6
CLDN1-202ENST00000490800 PIK3C2BO00750 1634 aa11.3□□□□□ -0.6
CLDN1-202ENST00000490800 LRRC7Q96NW7 1537 aa11.3□□□□□ -0.6
CLDN1-202ENST00000490800 CHGAP10645 457 aaKnown RBP11.29□□□□□ -0.6
CLDN1-202ENST00000490800 ROCK1Q13464 1354 aa11.28□□□□□ -0.6
CLDN1-202ENST00000490800 EFCAB6Q5THR3 1501 aa11.28□□□□□ -0.6
CLDN1-202ENST00000490800 SYNMO15061 1565 aa11.28□□□□□ -0.6
CLDN1-202ENST00000490800 STRCP1A6NGW2 1772 aa11.27□□□□□ -0.61
CLDN1-202ENST00000490800 KCNA6P17658 529 aa11.27□□□□□ -0.61
CLDN1-202ENST00000490800 HDGFP51858 240 aaKnown RBP11.27□□□□□ -0.61
CLDN1-202ENST00000490800 RBM33Q96EV2 1170 aaKnown RBP11.27□□□□□ -0.61
CLDN1-202ENST00000490800 NUP155O75694 1391 aa11.27□□□□□ -0.61
CLDN1-202ENST00000490800 PROSER2Q86WR7 435 aaPredicted RBP11.26□□□□□ -0.61
CLDN1-202ENST00000490800 RPRD2Q5VT52 1461 aaKnown RBP11.25□□□□□ -0.61
CLDN1-202ENST00000490800 HAP1P54257 671 aaPredicted RBP11.25□□□□□ -0.61
CLDN1-202ENST00000490800 NUTM2DQ5VT03 806 aaPredicted RBP11.25□□□□□ -0.61
CLDN1-202ENST00000490800 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
CLDN1-202ENST00000490800 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.25□□□□□ -0.61
CLDN1-202ENST00000490800 ALKQ9UM73 1620 aa11.24□□□□□ -0.61
CLDN1-202ENST00000490800 PPP1R15AO75807 674 aaPredicted RBP11.24□□□□□ -0.61
CLDN1-202ENST00000490800 RNF25Q96BH1 459 aaPredicted RBP11.24□□□□□ -0.61
CLDN1-202ENST00000490800 TET3O43151 1660 aa11.24□□□□□ -0.61
CLDN1-202ENST00000490800 SOCS7O14512 581 aa11.23□□□□□ -0.61
CLDN1-202ENST00000490800 PRKAR2AP13861 404 aaKnown RBP11.23□□□□□ -0.61
CLDN1-202ENST00000490800 TMEM94Q12767 1356 aa11.23□□□□□ -0.61
CLDN1-202ENST00000490800 ADGRB3O60242 1522 aa11.23□□□□□ -0.61
CLDN1-202ENST00000490800 KDM5AP29375 1690 aaKnown RBP11.22□□□□□ -0.61
CLDN1-202ENST00000490800 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLDN1-202ENST00000490800 RIMS2Q9UQ26 1411 aa11.22□□□□□ -0.61
CLDN1-202ENST00000490800 UNC13BO14795 1591 aa11.21□□□□□ -0.61
CLDN1-202ENST00000490800 TBX22Q9Y458 520 aa11.21□□□□□ -0.61
CLDN1-202ENST00000490800 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
CLDN1-202ENST00000490800 ZFYVE9O95405 1425 aa11.2□□□□□ -0.62
CLDN1-202ENST00000490800 PLEKHG1Q9ULL1 1385 aa11.2□□□□□ -0.62
CLDN1-202ENST00000490800 RIOK3O14730 519 aaKnown RBP11.19□□□□□ -0.62
CLDN1-202ENST00000490800 CHRDL2Q6WN34 429 aa11.19□□□□□ -0.62
CLDN1-202ENST00000490800 E9PCH4 1651 aa11.18□□□□□ -0.62
CLDN1-202ENST00000490800 TMEM131LA2VDJ0 1609 aa11.18□□□□□ -0.62
CLDN1-202ENST00000490800 PYGBP11216 843 aa11.18□□□□□ -0.62
CLDN1-202ENST00000490800 PAXIP1Q6ZW49 1069 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms