RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TRPM1Q7Z4N2 1603 aa17.41■□□□□ 0.38
USP40-214ENST00000483519 PER1O15534 1290 aaPredicted RBP17.4■□□□□ 0.38
USP40-214ENST00000483519 CENPQQ7L2Z9 268 aaPredicted RBP17.4■□□□□ 0.38
USP40-214ENST00000483519 HOMEZQ8IX15 550 aa17.39■□□□□ 0.37
USP40-214ENST00000483519 KDM2BQ8NHM5 1336 aa17.39■□□□□ 0.37
USP40-214ENST00000483519 COL17A1Q9UMD9 1497 aaPredicted RBP17.38■□□□□ 0.37
USP40-214ENST00000483519 PRAG1Q86YV5 1406 aa17.38■□□□□ 0.37
USP40-214ENST00000483519 BRPF3Q9ULD4 1205 aa17.38■□□□□ 0.37
USP40-214ENST00000483519 MAGI2Q86UL8 1455 aa17.38■□□□□ 0.37
USP40-214ENST00000483519 PODXL2Q9NZ53 605 aa17.37■□□□□ 0.37
USP40-214ENST00000483519 ABCC1P33527 1531 aa17.37■□□□□ 0.37
USP40-214ENST00000483519 TAOK2Q9UL54 1235 aa17.37■□□□□ 0.37
USP40-214ENST00000483519 FAM161AQ3B820 660 aa17.36■□□□□ 0.37
USP40-214ENST00000483519 ADGRL1O94910 1474 aa17.36■□□□□ 0.37
USP40-214ENST00000483519 LAMC1P11047 1609 aa17.36■□□□□ 0.37
USP40-214ENST00000483519 RTEL1-TNFRSF6BF6WH68 1400 aa17.36■□□□□ 0.37
USP40-214ENST00000483519 SKAP1Q86WV1 359 aa17.35■□□□□ 0.37
USP40-214ENST00000483519 DUOX2Q9NRD8 1548 aa17.35■□□□□ 0.37
USP40-214ENST00000483519 FRAT1Q92837 279 aaPredicted RBP17.34■□□□□ 0.37
USP40-214ENST00000483519 GPRASP1Q5JY77 1395 aa17.34■□□□□ 0.37
USP40-214ENST00000483519 CC2D1BQ5T0F9 858 aaKnown RBP17.34■□□□□ 0.37
USP40-214ENST00000483519 SCAPERQ9BY12 1400 aa17.34■□□□□ 0.37
USP40-214ENST00000483519 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.34■□□□□ 0.37
USP40-214ENST00000483519 ERBINQ96RT1 1412 aa17.34■□□□□ 0.37
USP40-214ENST00000483519 TSPY4P0CV99 314 aa17.34■□□□□ 0.37
USP40-214ENST00000483519 TSPY10P0CW01 314 aa17.34■□□□□ 0.37
USP40-214ENST00000483519 IQGAP3Q86VI3 1631 aa17.33■□□□□ 0.36
USP40-214ENST00000483519 CCDC144AA2RUR9 1427 aa17.32■□□□□ 0.36
USP40-214ENST00000483519 PRDM15P57071 1507 aaPredicted RBP17.32■□□□□ 0.36
USP40-214ENST00000483519 SLC4A3P48751 1232 aa17.32■□□□□ 0.36
USP40-214ENST00000483519 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.32■□□□□ 0.36
USP40-214ENST00000483519 C20orf194Q5TEA3 1177 aa17.31■□□□□ 0.36
USP40-214ENST00000483519 SYCP2Q9BX26 1530 aa17.31■□□□□ 0.36
USP40-214ENST00000483519 FAM135AQ9P2D6 1515 aa17.31■□□□□ 0.36
USP40-214ENST00000483519 C8orf34Q49A92 452 aa17.3■□□□□ 0.36
USP40-214ENST00000483519 EIF2AK4Q9P2K8 1649 aaKnown RBP17.29■□□□□ 0.36
USP40-214ENST00000483519 ATP10AO60312 1499 aa17.29■□□□□ 0.36
USP40-214ENST00000483519 DISP3Q9P2K9 1392 aa17.29■□□□□ 0.36
USP40-214ENST00000483519 PANK3Q9H999 370 aa17.29■□□□□ 0.36
USP40-214ENST00000483519 POGZQ7Z3K3 1410 aa17.28■□□□□ 0.36
USP40-214ENST00000483519 ZNF518AQ6AHZ1 1483 aa17.28■□□□□ 0.36
USP40-214ENST00000483519 HNRNPMP52272 730 aaKnown RBP eCLIP17.27■□□□□ 0.35
USP40-214ENST00000483519 TMF1P82094 1093 aa17.27■□□□□ 0.35
USP40-214ENST00000483519 TESK2Q96S53 571 aa17.27■□□□□ 0.35
USP40-214ENST00000483519 RAPGEF3O95398 923 aa17.26■□□□□ 0.35
USP40-214ENST00000483519 NBPF1Q3BBV0 1214 aa17.26■□□□□ 0.35
USP40-214ENST00000483519 DUSP27Q5VZP5 1158 aa17.26■□□□□ 0.35
USP40-214ENST00000483519 NEURL4Q96JN8 1562 aa17.25■□□□□ 0.35
USP40-214ENST00000483519 ADAMTS8Q9UP79 889 aa17.25■□□□□ 0.35
USP40-214ENST00000483519 DEPDC5O75140 1603 aa17.25■□□□□ 0.35
USP40-214ENST00000483519 RICTORQ6R327 1708 aa17.25■□□□□ 0.35
USP40-214ENST00000483519 WDR43Q15061 677 aaKnown RBP eCLIP17.25■□□□□ 0.35
USP40-214ENST00000483519 A2MP01023 1474 aa17.25■□□□□ 0.35
USP40-214ENST00000483519 EIF3AQ14152 1382 aaKnown RBP17.24■□□□□ 0.35
USP40-214ENST00000483519 INO80Q9ULG1 1556 aaPredicted RBP17.24■□□□□ 0.35
USP40-214ENST00000483519 FRAT2O75474 233 aaPredicted RBP17.23■□□□□ 0.35
USP40-214ENST00000483519 GOLGA2Q08379 1002 aa17.23■□□□□ 0.35
USP40-214ENST00000483519 TRAPPC8Q9Y2L5 1435 aa17.23■□□□□ 0.35
USP40-214ENST00000483519 PLEKHH1Q9ULM0 1364 aa17.23■□□□□ 0.35
USP40-214ENST00000483519 AFAP1Q8N556 730 aa17.22■□□□□ 0.35
USP40-214ENST00000483519 ZNF521Q96K83 1311 aa17.22■□□□□ 0.35
USP40-214ENST00000483519 FRMPD1Q5SYB0 1578 aa17.22■□□□□ 0.35
USP40-214ENST00000483519 RGL3Q3MIN7 710 aa17.21■□□□□ 0.35
USP40-214ENST00000483519 FAM43AQ8N2R8 423 aa17.21■□□□□ 0.35
USP40-214ENST00000483519 VIRMAQ69YN4 1812 aaKnown RBP17.21■□□□□ 0.35
USP40-214ENST00000483519 SPAG9O60271 1321 aaKnown RBP17.21■□□□□ 0.35
USP40-214ENST00000483519 ZFYVE16Q7Z3T8 1539 aa17.2■□□□□ 0.34
USP40-214ENST00000483519 RGS3P49796 1198 aa17.2■□□□□ 0.34
USP40-214ENST00000483519 MLH3Q9UHC1 1453 aa17.2■□□□□ 0.34
USP40-214ENST00000483519 UBE2Q2Q8WVN8 375 aa17.2■□□□□ 0.34
USP40-214ENST00000483519 RSPH6AQ9H0K4 717 aa17.19■□□□□ 0.34
USP40-214ENST00000483519 RNF17Q9BXT8 1623 aaKnown RBP17.18■□□□□ 0.34
USP40-214ENST00000483519 VWDEQ8N2E2 1590 aa17.18■□□□□ 0.34
USP40-214ENST00000483519 PPP2R1AP30153 589 aa17.18■□□□□ 0.34
USP40-214ENST00000483519 KNSTRNQ9Y448 316 aa17.18■□□□□ 0.34
USP40-214ENST00000483519 HECW2Q9P2P5 1572 aa17.17■□□□□ 0.34
USP40-214ENST00000483519 PLA2R1Q13018 1463 aa17.17■□□□□ 0.34
USP40-214ENST00000483519 SLFN5Q08AF3 891 aa17.17■□□□□ 0.34
USP40-214ENST00000483519 NKTRP30414 1462 aaKnown RBP17.15■□□□□ 0.34
USP40-214ENST00000483519 TPRNQ4KMQ1 711 aa17.14■□□□□ 0.33
USP40-214ENST00000483519 PIK3C2GO75747 1445 aa17.14■□□□□ 0.33
USP40-214ENST00000483519 BECN1Q14457 450 aa17.14■□□□□ 0.33
USP40-214ENST00000483519 ATP7AQ04656 1500 aa17.14■□□□□ 0.33
USP40-214ENST00000483519 SYNMO15061 1565 aa17.14■□□□□ 0.33
USP40-214ENST00000483519 TRMT2AQ8IZ69 625 aaKnown RBP17.13■□□□□ 0.33
USP40-214ENST00000483519 ARHGEF40Q8TER5 1519 aa17.13■□□□□ 0.33
USP40-214ENST00000483519 MAPK8IP3Q9UPT6 1336 aa17.12■□□□□ 0.33
USP40-214ENST00000483519 TET3O43151 1660 aa17.11■□□□□ 0.33
USP40-214ENST00000483519 CDCA8Q53HL2 280 aa17.11■□□□□ 0.33
USP40-214ENST00000483519 ASXL1Q8IXJ9 1541 aa17.11■□□□□ 0.33
USP40-214ENST00000483519 KIDINS220Q9ULH0 1771 aa17.11■□□□□ 0.33
USP40-214ENST00000483519 NINLQ9Y2I6 1382 aa17.1■□□□□ 0.33
USP40-214ENST00000483519 CGNL1Q0VF96 1302 aa17.1■□□□□ 0.33
USP40-214ENST00000483519 LMTK2Q8IWU2 1503 aa17.1■□□□□ 0.33
USP40-214ENST00000483519 YEATS2Q9ULM3 1422 aa17.1■□□□□ 0.33
USP40-214ENST00000483519 STAC3Q96MF2 364 aa17.1■□□□□ 0.33
USP40-214ENST00000483519 L1TD1Q5T7N2 865 aaKnown RBP17.09■□□□□ 0.33
USP40-214ENST00000483519 USP19O94966 1318 aa17.09■□□□□ 0.33
USP40-214ENST00000483519 IQGAP1P46940 1657 aa17.08■□□□□ 0.33
USP40-214ENST00000483519 E9PSI1 815 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms