RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 LTKP29376 864 aa12.38□□□□□ -0.43
PTPRN-214ENST00000477819 RBM33Q96EV2 1170 aaKnown RBP12.38□□□□□ -0.43
PTPRN-214ENST00000477819 MBD5Q9P267 1494 aa12.38□□□□□ -0.43
PTPRN-214ENST00000477819 ROBO1Q9Y6N7 1651 aa12.38□□□□□ -0.43
PTPRN-214ENST00000477819 CFAP65Q6ZU64 1925 aaKnown RBP12.37□□□□□ -0.43
PTPRN-214ENST00000477819 TMEM94Q12767 1356 aa12.35□□□□□ -0.43
PTPRN-214ENST00000477819 TXNDC2Q86VQ3 553 aa12.35□□□□□ -0.43
PTPRN-214ENST00000477819 RTEL1-TNFRSF6BF6WH68 1400 aa12.35□□□□□ -0.43
PTPRN-214ENST00000477819 SCAF11Q99590 1463 aaKnown RBP12.34□□□□□ -0.43
PTPRN-214ENST00000477819 FYCO1Q9BQS8 1478 aa12.33□□□□□ -0.44
PTPRN-214ENST00000477819 UBR1Q8IWV7 1749 aa12.32□□□□□ -0.44
PTPRN-214ENST00000477819 NCOA2Q15596 1464 aa12.32□□□□□ -0.44
PTPRN-214ENST00000477819 PROSER2Q86WR7 435 aaPredicted RBP12.31□□□□□ -0.44
PTPRN-214ENST00000477819 ERVK-7P63135 1459 aa12.31□□□□□ -0.44
PTPRN-214ENST00000477819 PHLPP1O60346 1717 aa12.31□□□□□ -0.44
PTPRN-214ENST00000477819 JCADQ9P266 1359 aa12.3□□□□□ -0.44
PTPRN-214ENST00000477819 LRP6O75581 1613 aa12.3□□□□□ -0.44
PTPRN-214ENST00000477819 TIAM1Q13009 1591 aa12.3□□□□□ -0.44
PTPRN-214ENST00000477819 ABCC3O15438 1527 aa12.29□□□□□ -0.44
PTPRN-214ENST00000477819 MAP3K1Q13233 1512 aa12.29□□□□□ -0.44
PTPRN-214ENST00000477819 MNX1P50219 401 aaPredicted RBP12.29□□□□□ -0.44
PTPRN-214ENST00000477819 MEX3CQ5U5Q3 659 aaKnown RBP12.29□□□□□ -0.44
PTPRN-214ENST00000477819 ZRANB1Q9UGI0 708 aa12.29□□□□□ -0.44
PTPRN-214ENST00000477819 ARHGAP23Q9P227 1491 aa12.28□□□□□ -0.44
PTPRN-214ENST00000477819 FKBP8Q14318 412 aa12.28□□□□□ -0.44
PTPRN-214ENST00000477819 ZNF772Q68DY9 489 aaPredicted RBP12.28□□□□□ -0.44
PTPRN-214ENST00000477819 SLAIN2Q9P270 581 aa12.28□□□□□ -0.44
PTPRN-214ENST00000477819 MTUS2Q5JR59 1369 aa12.28□□□□□ -0.44
PTPRN-214ENST00000477819 KCNA6P17658 529 aa12.27□□□□□ -0.45
PTPRN-214ENST00000477819 RXRBP28702 533 aa12.27□□□□□ -0.45
PTPRN-214ENST00000477819 SLC26A8Q96RN1 970 aa12.27□□□□□ -0.45
PTPRN-214ENST00000477819 EID1Q9Y6B2 187 aa12.27□□□□□ -0.45
PTPRN-214ENST00000477819 CCDC141Q6ZP82 1450 aa12.27□□□□□ -0.45
PTPRN-214ENST00000477819 SLIT1O75093 1534 aa12.27□□□□□ -0.45
PTPRN-214ENST00000477819 LRRC9Q6ZRR7 1453 aa12.25□□□□□ -0.45
PTPRN-214ENST00000477819 COL16A1Q07092 1604 aaPredicted RBP12.24□□□□□ -0.45
PTPRN-214ENST00000477819 CEP152O94986 1710 aa12.23□□□□□ -0.45
PTPRN-214ENST00000477819 MSH6P52701 1360 aa12.23□□□□□ -0.45
PTPRN-214ENST00000477819 ZNF579Q8NAF0 562 aaKnown RBP12.23□□□□□ -0.45
PTPRN-214ENST00000477819 PRDM15P57071 1507 aaPredicted RBP12.22□□□□□ -0.45
PTPRN-214ENST00000477819 CAMSAP2Q08AD1 1489 aa12.22□□□□□ -0.45
PTPRN-214ENST00000477819 TMEM2Q9UHN6 1383 aa12.22□□□□□ -0.45
PTPRN-214ENST00000477819 SPATA31A6Q5VVP1 1343 aa12.22□□□□□ -0.45
PTPRN-214ENST00000477819 NUTM2BA6NNL0 878 aaPredicted RBP12.21□□□□□ -0.45
PTPRN-214ENST00000477819 NUTM2EB1AL46 878 aaPredicted RBP12.21□□□□□ -0.45
PTPRN-214ENST00000477819 NUTM2AQ8IVF1 878 aaPredicted RBP12.21□□□□□ -0.45
PTPRN-214ENST00000477819 PIK3C2BO00750 1634 aa12.21□□□□□ -0.46
PTPRN-214ENST00000477819 MROH1Q8NDA8 1641 aa12.21□□□□□ -0.46
PTPRN-214ENST00000477819 TSPY4P0CV99 314 aa12.2□□□□□ -0.46
PTPRN-214ENST00000477819 TSPY10P0CW01 314 aa12.2□□□□□ -0.46
PTPRN-214ENST00000477819 TET3O43151 1660 aa12.19□□□□□ -0.46
PTPRN-214ENST00000477819 PAK3O75914 559 aaPredicted RBP12.19□□□□□ -0.46
PTPRN-214ENST00000477819 RSPH4AQ5TD94 716 aa12.19□□□□□ -0.46
PTPRN-214ENST00000477819 AFF2P51816 1311 aa12.18□□□□□ -0.46
PTPRN-214ENST00000477819 BCANQ96GW7 911 aa12.18□□□□□ -0.46
PTPRN-214ENST00000477819 CDK12Q9NYV4 1490 aaPredicted RBP12.18□□□□□ -0.46
PTPRN-214ENST00000477819 CEP162Q5TB80 1403 aa12.18□□□□□ -0.46
PTPRN-214ENST00000477819 FGD6Q6ZV73 1430 aa12.18□□□□□ -0.46
PTPRN-214ENST00000477819 NKTRP30414 1462 aaKnown RBP12.17□□□□□ -0.46
PTPRN-214ENST00000477819 NUTM2DQ5VT03 806 aaPredicted RBP12.17□□□□□ -0.46
PTPRN-214ENST00000477819 RGS12O14924 1447 aa12.17□□□□□ -0.46
PTPRN-214ENST00000477819 EHBP1L1Q8N3D4 1523 aa12.16□□□□□ -0.46
PTPRN-214ENST00000477819 IDI1Q13907 227 aa12.16□□□□□ -0.46
PTPRN-214ENST00000477819 PHF12Q96QT6 1004 aa12.16□□□□□ -0.46
PTPRN-214ENST00000477819 NWD1Q149M9 1564 aa12.16□□□□□ -0.46
PTPRN-214ENST00000477819 SHPRHQ149N8 1683 aa12.16□□□□□ -0.46
PTPRN-214ENST00000477819 ARHGEF5Q12774 1597 aa12.15□□□□□ -0.46
PTPRN-214ENST00000477819 SETBP1Q9Y6X0 1596 aa12.15□□□□□ -0.46
PTPRN-214ENST00000477819 POTEIP0CG38 1075 aa12.15□□□□□ -0.46
PTPRN-214ENST00000477819 MIER1Q8N108 512 aa12.15□□□□□ -0.46
PTPRN-214ENST00000477819 KDM5AP29375 1690 aaKnown RBP12.15□□□□□ -0.46
PTPRN-214ENST00000477819 QTRT2Q9H974 415 aaKnown RBP12.14□□□□□ -0.47
PTPRN-214ENST00000477819 EFCAB6Q5THR3 1501 aa12.14□□□□□ -0.47
PTPRN-214ENST00000477819 EIF2AK4Q9P2K8 1649 aaKnown RBP12.14□□□□□ -0.47
PTPRN-214ENST00000477819 ARHGAP31Q2M1Z3 1444 aa12.13□□□□□ -0.47
PTPRN-214ENST00000477819 AHDC1Q5TGY3 1603 aaPredicted RBP12.13□□□□□ -0.47
PTPRN-214ENST00000477819 C14orf37Q86TY3 774 aa12.13□□□□□ -0.47
PTPRN-214ENST00000477819 GALR2O43603 387 aaPredicted RBP12.12□□□□□ -0.47
PTPRN-214ENST00000477819 CLCN6P51797 869 aa12.12□□□□□ -0.47
PTPRN-214ENST00000477819 RBM6P78332 1123 aaKnown RBP12.12□□□□□ -0.47
PTPRN-214ENST00000477819 CHD2O14647 1828 aaKnown RBP12.11□□□□□ -0.47
PTPRN-214ENST00000477819 DIP2AQ14689 1571 aa12.11□□□□□ -0.47
PTPRN-214ENST00000477819 C8orf37Q96NL8 207 aa12.11□□□□□ -0.47
PTPRN-214ENST00000477819 EP400Q96L91 3159 aa12.11□□□□□ -0.47
PTPRN-214ENST00000477819 MAST1Q9Y2H9 1570 aa12.09□□□□□ -0.47
PTPRN-214ENST00000477819 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-214ENST00000477819 PLEKHG5O94827 1062 aa12.09□□□□□ -0.47
PTPRN-214ENST00000477819 ATF3P18847 181 aa12.09□□□□□ -0.47
PTPRN-214ENST00000477819 BRINP3Q76B58 766 aa12.09□□□□□ -0.47
PTPRN-214ENST00000477819 TSPYL2Q9H2G4 693 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-214ENST00000477819 CADPS2Q86UW7 1296 aa12.08□□□□□ -0.48
PTPRN-214ENST00000477819 PLCD3Q8N3E9 789 aa12.08□□□□□ -0.48
PTPRN-214ENST00000477819 DCBLD2Q96PD2 775 aa12.08□□□□□ -0.48
PTPRN-214ENST00000477819 ATAD2Q6PL18 1390 aa12.07□□□□□ -0.48
PTPRN-214ENST00000477819 DUOX2Q9NRD8 1548 aa12.07□□□□□ -0.48
PTPRN-214ENST00000477819 C19orf44Q9H6X5 657 aa12.07□□□□□ -0.48
PTPRN-214ENST00000477819 DDX17Q92841 729 aaKnown RBP12.06□□□□□ -0.48
PTPRN-214ENST00000477819 RRP7BPQ9NSQ0 103 aa12.06□□□□□ -0.48
PTPRN-214ENST00000477819 ADGRB3O60242 1522 aa12.06□□□□□ -0.48
PTPRN-214ENST00000477819 PPP1R15AO75807 674 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms