RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.99	□□□□□ -0.49
HDAC9-223	ENST00000476135	KDM5D	Q9BY66	1539 aa		11.98	□□□□□ -0.49
HDAC9-223	ENST00000476135	CCDC18	Q5T9S5	1454 aa		11.98	□□□□□ -0.49
HDAC9-223	ENST00000476135	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.97	□□□□□ -0.49
HDAC9-223	ENST00000476135	PLCD3	Q8N3E9	789 aa		11.97	□□□□□ -0.49
HDAC9-223	ENST00000476135	ROBO1	Q9Y6N7	1651 aa		11.97	□□□□□ -0.49
HDAC9-223	ENST00000476135	DHX29	Q7Z478	1369 aa	Known RBP	11.96	□□□□□ -0.49
HDAC9-223	ENST00000476135	CCDC61	Q9Y6R9	512 aa		11.94	□□□□□ -0.5
HDAC9-223	ENST00000476135	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.94	□□□□□ -0.5
HDAC9-223	ENST00000476135	JCAD	Q9P266	1359 aa		11.93	□□□□□ -0.5
HDAC9-223	ENST00000476135	WASHC2C	Q9Y4E1	1318 aa		11.93	□□□□□ -0.5
HDAC9-223	ENST00000476135	ZNF772	Q68DY9	489 aa	Predicted RBP	11.93	□□□□□ -0.5
HDAC9-223	ENST00000476135	TRIM52	Q96A61	297 aa		11.93	□□□□□ -0.5
HDAC9-223	ENST00000476135	MS4A3	Q96HJ5	214 aa		11.93	□□□□□ -0.5
HDAC9-223	ENST00000476135	LRRC9	Q6ZRR7	1453 aa		11.93	□□□□□ -0.5
HDAC9-223	ENST00000476135	SCAF11	Q99590	1463 aa	Known RBP	11.92	□□□□□ -0.5
HDAC9-223	ENST00000476135	KIF3B	O15066	747 aa		11.92	□□□□□ -0.5
HDAC9-223	ENST00000476135	RASEF	Q8IZ41	740 aa		11.92	□□□□□ -0.5
HDAC9-223	ENST00000476135	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.92	□□□□□ -0.5
HDAC9-223	ENST00000476135	CASKIN1	Q8WXD9	1431 aa		11.92	□□□□□ -0.5
HDAC9-223	ENST00000476135	PHLPP1	O60346	1717 aa		11.91	□□□□□ -0.5
HDAC9-223	ENST00000476135	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.91	□□□□□ -0.5
HDAC9-223	ENST00000476135	SRCAP	Q6ZRS2	3230 aa		11.9	□□□□□ -0.5
HDAC9-223	ENST00000476135	UBR1	Q8IWV7	1749 aa		11.89	□□□□□ -0.51
HDAC9-223	ENST00000476135	TMEM94	Q12767	1356 aa		11.89	□□□□□ -0.51
HDAC9-223	ENST00000476135	UBTF	P17480	764 aa	Known RBP	11.88	□□□□□ -0.51
HDAC9-223	ENST00000476135	RXRB	P28702	533 aa		11.88	□□□□□ -0.51
HDAC9-223	ENST00000476135	ARHGAP23	Q9P227	1491 aa		11.88	□□□□□ -0.51
HDAC9-223	ENST00000476135	MBD5	Q9P267	1494 aa		11.88	□□□□□ -0.51
HDAC9-223	ENST00000476135	SPATA31A6	Q5VVP1	1343 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	SLIT1	O75093	1534 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	MAP3K1	Q13233	1512 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	LRP6	O75581	1613 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	LTK	P29376	864 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	TXNDC2	Q86VQ3	553 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	CCNB3	Q8WWL7	1395 aa		11.87	□□□□□ -0.51
HDAC9-223	ENST00000476135	MEX3C	Q5U5Q3	659 aa	Known RBP	11.86	□□□□□ -0.51
HDAC9-223	ENST00000476135	KIF12	Q96FN5	646 aa		11.86	□□□□□ -0.51
HDAC9-223	ENST00000476135	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.86	□□□□□ -0.51
HDAC9-223	ENST00000476135	COL16A1	Q07092	1604 aa	Predicted RBP	11.86	□□□□□ -0.51
HDAC9-223	ENST00000476135	FGD6	Q6ZV73	1430 aa		11.86	□□□□□ -0.51
HDAC9-223	ENST00000476135	ERVK-7	P63135	1459 aa		11.85	□□□□□ -0.51
HDAC9-223	ENST00000476135	NCOA2	Q15596	1464 aa		11.85	□□□□□ -0.51
HDAC9-223	ENST00000476135	KCNA6	P17658	529 aa		11.84	□□□□□ -0.51
HDAC9-223	ENST00000476135	PROSER2	Q86WR7	435 aa	Predicted RBP	11.84	□□□□□ -0.51
HDAC9-223	ENST00000476135	PELP1	Q8IZL8	1130 aa	Known RBP	11.84	□□□□□ -0.51
HDAC9-223	ENST00000476135	SLAIN2	Q9P270	581 aa		11.84	□□□□□ -0.51
HDAC9-223	ENST00000476135	FYCO1	Q9BQS8	1478 aa		11.83	□□□□□ -0.52
HDAC9-223	ENST00000476135	NUBP1	P53384	320 aa		11.83	□□□□□ -0.52
HDAC9-223	ENST00000476135	EID1	Q9Y6B2	187 aa		11.83	□□□□□ -0.52
HDAC9-223	ENST00000476135	ZNF644	Q9H582	1327 aa	Predicted RBP	11.83	□□□□□ -0.52
HDAC9-223	ENST00000476135	ABCC3	O15438	1527 aa		11.82	□□□□□ -0.52
HDAC9-223	ENST00000476135	PRDM15	P57071	1507 aa	Predicted RBP	11.82	□□□□□ -0.52
HDAC9-223	ENST00000476135	SHPRH	Q149N8	1683 aa		11.82	□□□□□ -0.52
HDAC9-223	ENST00000476135	ASTL	Q6HA08	431 aa	Predicted RBP	11.82	□□□□□ -0.52
HDAC9-223	ENST00000476135	FBXO3	Q9UK99	471 aa		11.82	□□□□□ -0.52
HDAC9-223	ENST00000476135	MSH6	P52701	1360 aa		11.81	□□□□□ -0.52
HDAC9-223	ENST00000476135	TIAM1	Q13009	1591 aa		11.81	□□□□□ -0.52
HDAC9-223	ENST00000476135	NKTR	P30414	1462 aa	Known RBP	11.81	□□□□□ -0.52
HDAC9-223	ENST00000476135	ATMIN	O43313	823 aa	Predicted RBP	11.8	□□□□□ -0.52
HDAC9-223	ENST00000476135	CCDC141	Q6ZP82	1450 aa		11.79	□□□□□ -0.52
HDAC9-223	ENST00000476135	MAP3K13	O43283	966 aa		11.79	□□□□□ -0.52
HDAC9-223	ENST00000476135	RSPH4A	Q5TD94	716 aa		11.79	□□□□□ -0.52
HDAC9-223	ENST00000476135	CFAP65	Q6ZU64	1925 aa	Known RBP	11.79	□□□□□ -0.52
HDAC9-223	ENST00000476135	NWD1	Q149M9	1564 aa		11.79	□□□□□ -0.52
HDAC9-223	ENST00000476135	CAMSAP2	Q08AD1	1489 aa		11.78	□□□□□ -0.52
HDAC9-223	ENST00000476135	RBM33	Q96EV2	1170 aa	Known RBP	11.78	□□□□□ -0.52
HDAC9-223	ENST00000476135	TMEM2	Q9UHN6	1383 aa		11.78	□□□□□ -0.52
HDAC9-223	ENST00000476135	TET3	O43151	1660 aa		11.78	□□□□□ -0.52
HDAC9-223	ENST00000476135	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC9-223	ENST00000476135	RGS12	O14924	1447 aa		11.77	□□□□□ -0.53
HDAC9-223	ENST00000476135	SETBP1	Q9Y6X0	1596 aa		11.76	□□□□□ -0.53
HDAC9-223	ENST00000476135	KDM5A	P29375	1690 aa	Known RBP	11.76	□□□□□ -0.53
HDAC9-223	ENST00000476135	TRPC6	Q9Y210	931 aa		11.76	□□□□□ -0.53
HDAC9-223	ENST00000476135	POTEB2	H3BUK9	544 aa		11.75	□□□□□ -0.53
HDAC9-223	ENST00000476135	RBM6	P78332	1123 aa	Known RBP	11.75	□□□□□ -0.53
HDAC9-223	ENST00000476135	AFF2	P51816	1311 aa		11.75	□□□□□ -0.53
HDAC9-223	ENST00000476135	CEP152	O94986	1710 aa		11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	NUTM2E	B1AL46	878 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	SLC26A8	Q96RN1	970 aa		11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	MTUS2	Q5JR59	1369 aa		11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	ATAD2	Q6PL18	1390 aa		11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	PIK3C2B	O00750	1634 aa		11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.74	□□□□□ -0.53
HDAC9-223	ENST00000476135	MROH1	Q8NDA8	1641 aa		11.73	□□□□□ -0.53
HDAC9-223	ENST00000476135	DIP2A	Q14689	1571 aa		11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	ARHGAP31	Q2M1Z3	1444 aa		11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	NCOA3	Q9Y6Q9	1424 aa		11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	ATN1	P54259	1190 aa	Predicted RBP	11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	FAM212A	Q96EL1	285 aa		11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	QTRT2	Q9H974	415 aa	Known RBP	11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	METRN	Q9UJH8	293 aa		11.72	□□□□□ -0.53
HDAC9-223	ENST00000476135	ARHGEF5	Q12774	1597 aa		11.71	□□□□□ -0.53
HDAC9-223	ENST00000476135	TSPY4	P0CV99	314 aa		11.71	□□□□□ -0.53
HDAC9-223	ENST00000476135	TSPY10	P0CW01	314 aa		11.71	□□□□□ -0.53
HDAC9-223	ENST00000476135	SLC39A7	Q92504	469 aa		11.71	□□□□□ -0.53
HDAC9-223	ENST00000476135	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.71	□□□□□ -0.53

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