RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 RAB3GAP2Q9H2M9 1393 aa10.5□□□□□ -0.73
LIMD1-204ENST00000474665 ZC3H13Q5T200 1668 aaKnown RBP10.49□□□□□ -0.73
LIMD1-204ENST00000474665 NUP155O75694 1391 aa10.49□□□□□ -0.73
LIMD1-204ENST00000474665 PZPP20742 1482 aa10.49□□□□□ -0.73
LIMD1-204ENST00000474665 CDK12Q9NYV4 1490 aaPredicted RBP10.48□□□□□ -0.73
LIMD1-204ENST00000474665 TET3O43151 1660 aa10.47□□□□□ -0.73
LIMD1-204ENST00000474665 TMEM94Q12767 1356 aa10.47□□□□□ -0.73
LIMD1-204ENST00000474665 ARHGAP31Q2M1Z3 1444 aa10.47□□□□□ -0.73
LIMD1-204ENST00000474665 EFCAB6Q5THR3 1501 aa10.47□□□□□ -0.73
LIMD1-204ENST00000474665 E9PCH4 1651 aa10.47□□□□□ -0.73
LIMD1-204ENST00000474665 SPATA31A6Q5VVP1 1343 aa10.46□□□□□ -0.73
LIMD1-204ENST00000474665 KANK1Q14678 1352 aa10.46□□□□□ -0.74
LIMD1-204ENST00000474665 PHLPP1O60346 1717 aa10.46□□□□□ -0.74
LIMD1-204ENST00000474665 RGS12O14924 1447 aa10.45□□□□□ -0.74
LIMD1-204ENST00000474665 HRCP23327 699 aa10.45□□□□□ -0.74
LIMD1-204ENST00000474665 FOXD1Q16676 465 aa10.45□□□□□ -0.74
LIMD1-204ENST00000474665 ERVK-7P63135 1459 aa10.44□□□□□ -0.74
LIMD1-204ENST00000474665 NLRP1Q9C000 1473 aa10.44□□□□□ -0.74
LIMD1-204ENST00000474665 LTKP29376 864 aa10.44□□□□□ -0.74
LIMD1-204ENST00000474665 IFFO2Q5TF58 517 aa10.44□□□□□ -0.74
LIMD1-204ENST00000474665 SLAIN2Q9P270 581 aa10.44□□□□□ -0.74
LIMD1-204ENST00000474665 NOS1P29475 1434 aa10.43□□□□□ -0.74
LIMD1-204ENST00000474665 AFF2P51816 1311 aa10.43□□□□□ -0.74
LIMD1-204ENST00000474665 PROSER2Q86WR7 435 aaPredicted RBP10.43□□□□□ -0.74
LIMD1-204ENST00000474665 PCGF6Q9BYE7 350 aa10.42□□□□□ -0.74
LIMD1-204ENST00000474665 QTRT2Q9H974 415 aaKnown RBP10.42□□□□□ -0.74
LIMD1-204ENST00000474665 RPRD2Q5VT52 1461 aaKnown RBP10.42□□□□□ -0.74
LIMD1-204ENST00000474665 TXNDC2Q86VQ3 553 aa10.41□□□□□ -0.74
LIMD1-204ENST00000474665 MPHOSPH9Q99550 1183 aa10.41□□□□□ -0.74
LIMD1-204ENST00000474665 COL16A1Q07092 1604 aaPredicted RBP10.4□□□□□ -0.74
LIMD1-204ENST00000474665 RBM6P78332 1123 aaKnown RBP10.4□□□□□ -0.74
LIMD1-204ENST00000474665 SLC4A1APQ9BWU0 796 aaKnown RBP10.4□□□□□ -0.74
LIMD1-204ENST00000474665 ATAD2Q6PL18 1390 aa10.39□□□□□ -0.75
LIMD1-204ENST00000474665 SCAF11Q99590 1463 aaKnown RBP10.38□□□□□ -0.75
LIMD1-204ENST00000474665 PIK3C2BO00750 1634 aa10.38□□□□□ -0.75
LIMD1-204ENST00000474665 KCNA6P17658 529 aa10.38□□□□□ -0.75
LIMD1-204ENST00000474665 SPHKAPQ2M3C7 1700 aa10.38□□□□□ -0.75
LIMD1-204ENST00000474665 IDI1Q13907 227 aa10.37□□□□□ -0.75
LIMD1-204ENST00000474665 MYO5BQ9ULV0 1848 aa10.36□□□□□ -0.75
LIMD1-204ENST00000474665 MSH6P52701 1360 aa10.36□□□□□ -0.75
LIMD1-204ENST00000474665 ACIN1Q9UKV3 1341 aaKnown RBP10.35□□□□□ -0.75
LIMD1-204ENST00000474665 TRPM2O94759 1503 aa10.35□□□□□ -0.75
LIMD1-204ENST00000474665 C8orf37Q96NL8 207 aa10.35□□□□□ -0.75
LIMD1-204ENST00000474665 CLTCL1P53675 1640 aa10.35□□□□□ -0.75
LIMD1-204ENST00000474665 ANKRD30BQ9BXX2 1392 aa10.35□□□□□ -0.75
LIMD1-204ENST00000474665 UBR1Q8IWV7 1749 aa10.35□□□□□ -0.75
LIMD1-204ENST00000474665 YY1P25490 414 aa10.34□□□□□ -0.75
LIMD1-204ENST00000474665 SLC26A8Q96RN1 970 aa10.34□□□□□ -0.75
LIMD1-204ENST00000474665 EID1Q9Y6B2 187 aa10.34□□□□□ -0.75
LIMD1-204ENST00000474665 DHX57Q6P158 1386 aaKnown RBP10.34□□□□□ -0.75
LIMD1-204ENST00000474665 TMEM131LA2VDJ0 1609 aa10.33□□□□□ -0.76
LIMD1-204ENST00000474665 NGLY1Q96IV0 654 aa10.33□□□□□ -0.76
LIMD1-204ENST00000474665 SLC52A1Q9NWF4 448 aa10.33□□□□□ -0.76
LIMD1-204ENST00000474665 SHPRHQ149N8 1683 aa10.32□□□□□ -0.76
LIMD1-204ENST00000474665 KDM5AP29375 1690 aaKnown RBP10.31□□□□□ -0.76
LIMD1-204ENST00000474665 ARHGAP23Q9P227 1491 aa10.31□□□□□ -0.76
LIMD1-204ENST00000474665 CCDC125Q86Z20 511 aa10.31□□□□□ -0.76
LIMD1-204ENST00000474665 ADGRB3O60242 1522 aa10.31□□□□□ -0.76
LIMD1-204ENST00000474665 LRP5O75197 1615 aa10.3□□□□□ -0.76
LIMD1-204ENST00000474665 SPATA31E1Q6ZUB1 1445 aa10.3□□□□□ -0.76
LIMD1-204ENST00000474665 SLIT1O75093 1534 aa10.29□□□□□ -0.76
LIMD1-204ENST00000474665 KIF1BO60333 1816 aa10.28□□□□□ -0.76
LIMD1-204ENST00000474665 TMEM2Q9UHN6 1383 aa10.28□□□□□ -0.76
LIMD1-204ENST00000474665 ZFYVE9O95405 1425 aa10.28□□□□□ -0.76
LIMD1-204ENST00000474665 PSDA5PKW4 1024 aaPredicted RBP10.28□□□□□ -0.76
LIMD1-204ENST00000474665 DEFB132Q7Z7B7 95 aa10.28□□□□□ -0.76
LIMD1-204ENST00000474665 CCDC144AA2RUR9 1427 aa10.27□□□□□ -0.77
LIMD1-204ENST00000474665 AHDC1Q5TGY3 1603 aaPredicted RBP10.27□□□□□ -0.77
LIMD1-204ENST00000474665 DIP2AQ14689 1571 aa10.26□□□□□ -0.77
LIMD1-204ENST00000474665 ADAMTS2O95450 1211 aa10.26□□□□□ -0.77
LIMD1-204ENST00000474665 NKTRP30414 1462 aaKnown RBP10.25□□□□□ -0.77
LIMD1-204ENST00000474665 CHGAP10645 457 aaKnown RBP10.25□□□□□ -0.77
LIMD1-204ENST00000474665 BRINP3Q76B58 766 aa10.25□□□□□ -0.77
LIMD1-204ENST00000474665 C14orf37Q86TY3 774 aa10.25□□□□□ -0.77
LIMD1-204ENST00000474665 BCANQ96GW7 911 aa10.25□□□□□ -0.77
LIMD1-204ENST00000474665 SIN3AQ96ST3 1273 aa10.25□□□□□ -0.77
LIMD1-204ENST00000474665 RIMS2Q9UQ26 1411 aa10.24□□□□□ -0.77
LIMD1-204ENST00000474665 NEXMIFQ5QGS0 1516 aa10.24□□□□□ -0.77
LIMD1-204ENST00000474665 STAG3Q9UJ98 1225 aa10.24□□□□□ -0.77
LIMD1-204ENST00000474665 USP21Q9UK80 565 aa10.24□□□□□ -0.77
LIMD1-204ENST00000474665 PPLO60437 1756 aa10.24□□□□□ -0.77
LIMD1-204ENST00000474665 SENP3-EIF4A1A0A087X0R7 540 aa10.23□□□□□ -0.77
LIMD1-204ENST00000474665 TRPC5Q9UL62 973 aaPredicted RBP10.23□□□□□ -0.77
LIMD1-204ENST00000474665 IFT172Q9UG01 1749 aa10.23□□□□□ -0.77
LIMD1-204ENST00000474665 NWD1Q149M9 1564 aa10.22□□□□□ -0.77
LIMD1-204ENST00000474665 ATF3P18847 181 aa10.22□□□□□ -0.77
LIMD1-204ENST00000474665 RGL3Q3MIN7 710 aa10.22□□□□□ -0.77
LIMD1-204ENST00000474665 CADPS2Q86UW7 1296 aa10.22□□□□□ -0.77
LIMD1-204ENST00000474665 DDX17Q92841 729 aaKnown RBP10.21□□□□□ -0.77
LIMD1-204ENST00000474665 LRRC59Q96AG4 307 aaKnown RBP10.21□□□□□ -0.77
LIMD1-204ENST00000474665 NRXN3Q9Y4C0 1643 aa10.21□□□□□ -0.78
LIMD1-204ENST00000474665 BLMP54132 1417 aaPredicted RBP10.2□□□□□ -0.78
LIMD1-204ENST00000474665 ZNF326Q5BKZ1 582 aaKnown RBP10.2□□□□□ -0.78
LIMD1-204ENST00000474665 ADGRF5Q8IZF2 1346 aa10.2□□□□□ -0.78
LIMD1-204ENST00000474665 C19orf44Q9H6X5 657 aa10.2□□□□□ -0.78
LIMD1-204ENST00000474665 EP400Q96L91 3159 aa10.2□□□□□ -0.78
LIMD1-204ENST00000474665 ADAMTS13Q76LX8 1427 aa10.19□□□□□ -0.78
LIMD1-204ENST00000474665 PNPLA6Q8IY17 1366 aa10.19□□□□□ -0.78
LIMD1-204ENST00000474665 PLEKHG1Q9ULL1 1385 aa10.19□□□□□ -0.78
LIMD1-204ENST00000474665 RPGRIP1LQ68CZ1 1315 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms