RNA–Protein interactions for RNA: ENST00000462198.5

SMARCC1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 785 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-204ENST00000462198 IQGAP1P46940 1657 aa9.61□□□□□ -0.87
SMARCC1-204ENST00000462198 HAP1P54257 671 aaPredicted RBP9.61□□□□□ -0.87
SMARCC1-204ENST00000462198 FAM163AQ96GL9 167 aaPredicted RBP9.61□□□□□ -0.87
SMARCC1-204ENST00000462198 SCUBE2Q9NQ36 999 aa9.61□□□□□ -0.87
SMARCC1-204ENST00000462198 PREX2Q70Z35 1606 aa9.6□□□□□ -0.87
SMARCC1-204ENST00000462198 MNX1P50219 401 aaPredicted RBP9.6□□□□□ -0.87
SMARCC1-204ENST00000462198 ZNF772Q68DY9 489 aaPredicted RBP9.6□□□□□ -0.87
SMARCC1-204ENST00000462198 XIRP1Q702N8 1843 aaKnown RBP9.6□□□□□ -0.87
SMARCC1-204ENST00000462198 FAM135AQ9P2D6 1515 aa9.6□□□□□ -0.87
SMARCC1-204ENST00000462198 SYNMO15061 1565 aa9.59□□□□□ -0.87
SMARCC1-204ENST00000462198 UGGT1Q9NYU2 1555 aa9.59□□□□□ -0.87
SMARCC1-204ENST00000462198 MIA2Q96PC5 1412 aa9.59□□□□□ -0.87
SMARCC1-204ENST00000462198 RXRBP28702 533 aa9.59□□□□□ -0.87
SMARCC1-204ENST00000462198 VASPP50552 380 aaPredicted RBP9.59□□□□□ -0.87
SMARCC1-204ENST00000462198 PLXNC1O60486 1568 aa9.58□□□□□ -0.88
SMARCC1-204ENST00000462198 FMN1Q68DA7 1419 aa9.58□□□□□ -0.88
SMARCC1-204ENST00000462198 ATP7AQ04656 1500 aa9.58□□□□□ -0.88
SMARCC1-204ENST00000462198 WASHC2CQ9Y4E1 1318 aa9.57□□□□□ -0.88
SMARCC1-204ENST00000462198 CDC42BPAQ5VT25 1732 aa9.57□□□□□ -0.88
SMARCC1-204ENST00000462198 SPDYE4A6NLX3 237 aa9.57□□□□□ -0.88
SMARCC1-204ENST00000462198 MEX3CQ5U5Q3 659 aaKnown RBP9.57□□□□□ -0.88
SMARCC1-204ENST00000462198 ROBO1Q9Y6N7 1651 aa9.56□□□□□ -0.88
SMARCC1-204ENST00000462198 NLRP1Q9C000 1473 aa9.56□□□□□ -0.88
SMARCC1-204ENST00000462198 JCADQ9P266 1359 aa9.56□□□□□ -0.88
SMARCC1-204ENST00000462198 KIF3BO15066 747 aa9.56□□□□□ -0.88
SMARCC1-204ENST00000462198 LRRIQ1Q96JM4 1722 aa9.56□□□□□ -0.88
SMARCC1-204ENST00000462198 PZPP20742 1482 aa9.55□□□□□ -0.88
SMARCC1-204ENST00000462198 VSIG10Q8N0Z9 540 aa9.55□□□□□ -0.88
SMARCC1-204ENST00000462198 SYCP2Q9BX26 1530 aa9.55□□□□□ -0.88
SMARCC1-204ENST00000462198 PRKCSHP14314 528 aaPredicted RBP9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 LTKP29376 864 aa9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 TXNDC2Q86VQ3 553 aa9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 PROSER2Q86WR7 435 aaPredicted RBP9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 RBM33Q96EV2 1170 aaKnown RBP9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 SLAIN2Q9P270 581 aa9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 TAOK2Q9UL54 1235 aa9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 ADGBQ8N7X0 1667 aa9.54□□□□□ -0.88
SMARCC1-204ENST00000462198 DHX29Q7Z478 1369 aaKnown RBP9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 ZC3H13Q5T200 1668 aaKnown RBP9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 IFNLR1Q8IU57 520 aaPredicted RBP9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 CFDP1Q9UEE9 299 aaPredicted RBP9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 KIAA1107Q9UPP5 1409 aa9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 INO80Q9ULG1 1556 aaPredicted RBP9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 PHLPP1O60346 1717 aa9.53□□□□□ -0.88
SMARCC1-204ENST00000462198 TMEM94Q12767 1356 aa9.52□□□□□ -0.88
SMARCC1-204ENST00000462198 SPATA31A6Q5VVP1 1343 aa9.52□□□□□ -0.89
SMARCC1-204ENST00000462198 KDM5DQ9BY66 1539 aa9.51□□□□□ -0.89
SMARCC1-204ENST00000462198 GPATCH8Q9UKJ3 1502 aaKnown RBP9.51□□□□□ -0.89
SMARCC1-204ENST00000462198 CFAP65Q6ZU64 1925 aaKnown RBP9.51□□□□□ -0.89
SMARCC1-204ENST00000462198 UBTFP17480 764 aaKnown RBP9.51□□□□□ -0.89
SMARCC1-204ENST00000462198 NUTM2BA6NNL0 878 aaPredicted RBP9.5□□□□□ -0.89
SMARCC1-204ENST00000462198 NUTM2EB1AL46 878 aaPredicted RBP9.5□□□□□ -0.89
SMARCC1-204ENST00000462198 KCNA6P17658 529 aa9.5□□□□□ -0.89
SMARCC1-204ENST00000462198 ATN1P54259 1190 aaPredicted RBP9.5□□□□□ -0.89
SMARCC1-204ENST00000462198 NUTM2DQ5VT03 806 aaPredicted RBP9.5□□□□□ -0.89
SMARCC1-204ENST00000462198 NUTM2AQ8IVF1 878 aaPredicted RBP9.5□□□□□ -0.89
SMARCC1-204ENST00000462198 LRP6O75581 1613 aa9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 PLEKHH2Q8IVE3 1493 aa9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 SCAF11Q99590 1463 aaKnown RBP9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 ARHGAP35Q9NRY4 1499 aa9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 CDK12Q9NYV4 1490 aaPredicted RBP9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 POTEFA5A3E0 1075 aa9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 CDAN1Q8IWY9 1227 aa9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 EID1Q9Y6B2 187 aa9.49□□□□□ -0.89
SMARCC1-204ENST00000462198 ZNF644Q9H582 1327 aaPredicted RBP9.48□□□□□ -0.89
SMARCC1-204ENST00000462198 QTRT2Q9H974 415 aaKnown RBP9.47□□□□□ -0.89
SMARCC1-204ENST00000462198 LRRC9Q6ZRR7 1453 aa9.47□□□□□ -0.89
SMARCC1-204ENST00000462198 SETBP1Q9Y6X0 1596 aa9.46□□□□□ -0.89
SMARCC1-204ENST00000462198 RBM6P78332 1123 aaKnown RBP9.46□□□□□ -0.9
SMARCC1-204ENST00000462198 AFF2P51816 1311 aa9.46□□□□□ -0.9
SMARCC1-204ENST00000462198 RTEL1-TNFRSF6BF6WH68 1400 aa9.46□□□□□ -0.9
SMARCC1-204ENST00000462198 SLC26A8Q96RN1 970 aa9.45□□□□□ -0.9
SMARCC1-204ENST00000462198 MSH6P52701 1360 aa9.45□□□□□ -0.9
SMARCC1-204ENST00000462198 CCNB3Q8WWL7 1395 aa9.45□□□□□ -0.9
SMARCC1-204ENST00000462198 FGD6Q6ZV73 1430 aa9.45□□□□□ -0.9
SMARCC1-204ENST00000462198 UBR1Q8IWV7 1749 aa9.45□□□□□ -0.9
SMARCC1-204ENST00000462198 CCDC18Q5T9S5 1454 aa9.44□□□□□ -0.9
SMARCC1-204ENST00000462198 MAP3K1Q13233 1512 aa9.44□□□□□ -0.9
SMARCC1-204ENST00000462198 COL16A1Q07092 1604 aaPredicted RBP9.44□□□□□ -0.9
SMARCC1-204ENST00000462198 NCOA2Q15596 1464 aa9.43□□□□□ -0.9
SMARCC1-204ENST00000462198 ARHGAP23Q9P227 1491 aa9.43□□□□□ -0.9
SMARCC1-204ENST00000462198 BMP2KQ9NSY1 1161 aaPredicted RBP9.43□□□□□ -0.9
SMARCC1-204ENST00000462198 SLIT1O75093 1534 aa9.42□□□□□ -0.9
SMARCC1-204ENST00000462198 MBD5Q9P267 1494 aa9.42□□□□□ -0.9
SMARCC1-204ENST00000462198 RGS12O14924 1447 aa9.42□□□□□ -0.9
SMARCC1-204ENST00000462198 CASKIN1Q8WXD9 1431 aa9.42□□□□□ -0.9
SMARCC1-204ENST00000462198 CCDC61Q9Y6R9 512 aa9.42□□□□□ -0.9
SMARCC1-204ENST00000462198 PRDM15P57071 1507 aaPredicted RBP9.41□□□□□ -0.9
SMARCC1-204ENST00000462198 ERVK-7P63135 1459 aa9.41□□□□□ -0.9
SMARCC1-204ENST00000462198 ATAD2Q6PL18 1390 aa9.41□□□□□ -0.9
SMARCC1-204ENST00000462198 NGLY1Q96IV0 654 aa9.41□□□□□ -0.9
SMARCC1-204ENST00000462198 SHPRHQ149N8 1683 aa9.4□□□□□ -0.9
SMARCC1-204ENST00000462198 CCDC125Q86Z20 511 aa9.4□□□□□ -0.9
SMARCC1-204ENST00000462198 KIF12Q96FN5 646 aa9.4□□□□□ -0.9
SMARCC1-204ENST00000462198 C8orf37Q96NL8 207 aa9.4□□□□□ -0.9
SMARCC1-204ENST00000462198 TMEM2Q9UHN6 1383 aa9.39□□□□□ -0.91
SMARCC1-204ENST00000462198 LOC105371045A0A1W2PR82 267 aa9.39□□□□□ -0.91
SMARCC1-204ENST00000462198 RSPH4AQ5TD94 716 aa9.39□□□□□ -0.91
SMARCC1-204ENST00000462198 KDM2AQ9Y2K7 1162 aa9.39□□□□□ -0.91
SMARCC1-204ENST00000462198 TIE1P35590 1138 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms