RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 KIF15Q9NS87 1388 aa13.05□□□□□ -0.32
VPS50-207ENST00000458530 NLRP1Q9C000 1473 aa13.04□□□□□ -0.32
VPS50-207ENST00000458530 KDM5DQ9BY66 1539 aa13.04□□□□□ -0.32
VPS50-207ENST00000458530 NPHP4O75161 1426 aaPredicted RBP13.04□□□□□ -0.32
VPS50-207ENST00000458530 ANKLE2Q86XL3 938 aa13.03□□□□□ -0.32
VPS50-207ENST00000458530 RGS17Q9UGC6 210 aaPredicted RBP13.03□□□□□ -0.32
VPS50-207ENST00000458530 LRRC7Q96NW7 1537 aa13.03□□□□□ -0.32
VPS50-207ENST00000458530 ERBINQ96RT1 1412 aa13.02□□□□□ -0.33
VPS50-207ENST00000458530 UNC13BO14795 1591 aa13.02□□□□□ -0.33
VPS50-207ENST00000458530 STRCP1A6NGW2 1772 aa13.02□□□□□ -0.33
VPS50-207ENST00000458530 THEMISQ8N1K5 641 aaPredicted RBP13.01□□□□□ -0.33
VPS50-207ENST00000458530 TRIM52Q96A61 297 aa13.01□□□□□ -0.33
VPS50-207ENST00000458530 UGGT1Q9NYU2 1555 aa13.01□□□□□ -0.33
VPS50-207ENST00000458530 RNF17Q9BXT8 1623 aaKnown RBP13□□□□□ -0.33
VPS50-207ENST00000458530 EIF2AK4Q9P2K8 1649 aaKnown RBP13□□□□□ -0.33
VPS50-207ENST00000458530 SYNMO15061 1565 aa13□□□□□ -0.33
VPS50-207ENST00000458530 IQGAP1P46940 1657 aa12.99□□□□□ -0.33
VPS50-207ENST00000458530 TIMELESSQ9UNS1 1208 aa12.97□□□□□ -0.33
VPS50-207ENST00000458530 ZC3H13Q5T200 1668 aaKnown RBP12.96□□□□□ -0.33
VPS50-207ENST00000458530 IQGAP3Q86VI3 1631 aa12.96□□□□□ -0.33
VPS50-207ENST00000458530 KIF3BO15066 747 aa12.96□□□□□ -0.33
VPS50-207ENST00000458530 POTEHQ6S545 545 aa12.96□□□□□ -0.33
VPS50-207ENST00000458530 WASHC2CQ9Y4E1 1318 aa12.94□□□□□ -0.34
VPS50-207ENST00000458530 AKT1S1Q96B36 256 aa12.94□□□□□ -0.34
VPS50-207ENST00000458530 MPHOSPH9Q99550 1183 aa12.94□□□□□ -0.34
VPS50-207ENST00000458530 ABCC3O15438 1527 aa12.93□□□□□ -0.34
VPS50-207ENST00000458530 ARHGAP23Q9P227 1491 aa12.92□□□□□ -0.34
VPS50-207ENST00000458530 FAM135BQ49AJ0 1406 aa12.92□□□□□ -0.34
VPS50-207ENST00000458530 NUP155O75694 1391 aa12.92□□□□□ -0.34
VPS50-207ENST00000458530 ERVK-7P63135 1459 aa12.91□□□□□ -0.34
VPS50-207ENST00000458530 XIRP1Q702N8 1843 aaKnown RBP12.91□□□□□ -0.34
VPS50-207ENST00000458530 SLIT1O75093 1534 aa12.9□□□□□ -0.34
VPS50-207ENST00000458530 TONSLQ96HA7 1378 aa12.9□□□□□ -0.34
VPS50-207ENST00000458530 MROH1Q8NDA8 1641 aa12.89□□□□□ -0.35
VPS50-207ENST00000458530 POTEAQ6S8J7 498 aa12.89□□□□□ -0.35
VPS50-207ENST00000458530 REM2Q8IYK8 340 aaPredicted RBP12.89□□□□□ -0.35
VPS50-207ENST00000458530 SCAF11Q99590 1463 aaKnown RBP12.89□□□□□ -0.35
VPS50-207ENST00000458530 PRDM15P57071 1507 aaPredicted RBP12.88□□□□□ -0.35
VPS50-207ENST00000458530 UBR1Q8IWV7 1749 aa12.88□□□□□ -0.35
VPS50-207ENST00000458530 CHRDL2Q6WN34 429 aa12.88□□□□□ -0.35
VPS50-207ENST00000458530 KANK1Q14678 1352 aa12.88□□□□□ -0.35
VPS50-207ENST00000458530 TET3O43151 1660 aa12.88□□□□□ -0.35
VPS50-207ENST00000458530 LTKP29376 864 aa12.87□□□□□ -0.35
VPS50-207ENST00000458530 ANKRD30BQ9BXX2 1392 aa12.86□□□□□ -0.35
VPS50-207ENST00000458530 RPRD2Q5VT52 1461 aaKnown RBP12.85□□□□□ -0.35
VPS50-207ENST00000458530 NEUROD1Q13562 356 aa12.85□□□□□ -0.35
VPS50-207ENST00000458530 ARHGAP31Q2M1Z3 1444 aa12.85□□□□□ -0.35
VPS50-207ENST00000458530 SPDYE2BA6NHP3 402 aa12.84□□□□□ -0.35
VPS50-207ENST00000458530 SPDYE6P0CI01 402 aa12.84□□□□□ -0.35
VPS50-207ENST00000458530 SPDYE2Q495Y8 402 aa12.84□□□□□ -0.35
VPS50-207ENST00000458530 SPHKAPQ2M3C7 1700 aa12.83□□□□□ -0.36
VPS50-207ENST00000458530 SIN3AQ96ST3 1273 aa12.83□□□□□ -0.36
VPS50-207ENST00000458530 E9PCH4 1651 aa12.82□□□□□ -0.36
VPS50-207ENST00000458530 CEP152O94986 1710 aa12.81□□□□□ -0.36
VPS50-207ENST00000458530 TMEM94Q12767 1356 aa12.8□□□□□ -0.36
VPS50-207ENST00000458530 TMEM2Q9UHN6 1383 aa12.8□□□□□ -0.36
VPS50-207ENST00000458530 ROBO1Q9Y6N7 1651 aa12.8□□□□□ -0.36
VPS50-207ENST00000458530 LMTK2Q8IWU2 1503 aa12.79□□□□□ -0.36
VPS50-207ENST00000458530 TXNDC2Q86VQ3 553 aa12.79□□□□□ -0.36
VPS50-207ENST00000458530 KDM5AP29375 1690 aaKnown RBP12.79□□□□□ -0.36
VPS50-207ENST00000458530 EFCAB6Q5THR3 1501 aa12.78□□□□□ -0.36
VPS50-207ENST00000458530 ZNF692Q9BU19 519 aaPredicted RBP12.78□□□□□ -0.36
VPS50-207ENST00000458530 CCDC144AA2RUR9 1427 aa12.78□□□□□ -0.36
VPS50-207ENST00000458530 NWD1Q149M9 1564 aa12.77□□□□□ -0.36
VPS50-207ENST00000458530 PITPNM1O00562 1244 aa12.77□□□□□ -0.37
VPS50-207ENST00000458530 KCNA6P17658 529 aa12.77□□□□□ -0.37
VPS50-207ENST00000458530 NKTRP30414 1462 aaKnown RBP12.77□□□□□ -0.37
VPS50-207ENST00000458530 TRPM2O94759 1503 aa12.77□□□□□ -0.37
VPS50-207ENST00000458530 PPP1R15AO75807 674 aaPredicted RBP12.76□□□□□ -0.37
VPS50-207ENST00000458530 PIK3C2BO00750 1634 aa12.76□□□□□ -0.37
VPS50-207ENST00000458530 SETD1AO15047 1707 aaKnown RBP12.76□□□□□ -0.37
VPS50-207ENST00000458530 ZNF316A6NFI3 1004 aaPredicted RBP12.75□□□□□ -0.37
VPS50-207ENST00000458530 KIF1BO60333 1816 aa12.75□□□□□ -0.37
VPS50-207ENST00000458530 EID1Q9Y6B2 187 aa12.74□□□□□ -0.37
VPS50-207ENST00000458530 JCADQ9P266 1359 aa12.73□□□□□ -0.37
VPS50-207ENST00000458530 SSUH2Q9Y2M2 353 aa12.72□□□□□ -0.37
VPS50-207ENST00000458530 COL16A1Q07092 1604 aaPredicted RBP12.72□□□□□ -0.37
VPS50-207ENST00000458530 CFAP65Q6ZU64 1925 aaKnown RBP12.72□□□□□ -0.37
VPS50-207ENST00000458530 LRP6O75581 1613 aa12.71□□□□□ -0.37
VPS50-207ENST00000458530 UPF1Q92900 1129 aaKnown RBP eCLIP12.71□□□□□ -0.37
VPS50-207ENST00000458530 NOS1P29475 1434 aa12.71□□□□□ -0.38
VPS50-207ENST00000458530 CLTCL1P53675 1640 aa12.7□□□□□ -0.38
VPS50-207ENST00000458530 PHLPP1O60346 1717 aa12.69□□□□□ -0.38
VPS50-207ENST00000458530 IDI1Q13907 227 aa12.69□□□□□ -0.38
VPS50-207ENST00000458530 PROSER2Q86WR7 435 aaPredicted RBP12.69□□□□□ -0.38
VPS50-207ENST00000458530 L3MBTL2Q969R5 705 aa12.69□□□□□ -0.38
VPS50-207ENST00000458530 SLAIN2Q9P270 581 aa12.69□□□□□ -0.38
VPS50-207ENST00000458530 NCOA3Q9Y6Q9 1424 aa12.69□□□□□ -0.38
VPS50-207ENST00000458530 MSH6P52701 1360 aa12.68□□□□□ -0.38
VPS50-207ENST00000458530 ADGRB3O60242 1522 aa12.67□□□□□ -0.38
VPS50-207ENST00000458530 SPATA31A6Q5VVP1 1343 aa12.67□□□□□ -0.38
VPS50-207ENST00000458530 CDK12Q9NYV4 1490 aaPredicted RBP12.67□□□□□ -0.38
VPS50-207ENST00000458530 SLC26A8Q96RN1 970 aa12.67□□□□□ -0.38
VPS50-207ENST00000458530 ZFYVE9O95405 1425 aa12.67□□□□□ -0.38
VPS50-207ENST00000458530 AHDC1Q5TGY3 1603 aaPredicted RBP12.66□□□□□ -0.38
VPS50-207ENST00000458530 RBM33Q96EV2 1170 aaKnown RBP12.66□□□□□ -0.38
VPS50-207ENST00000458530 PIP4P2Q8N4L2 257 aa12.65□□□□□ -0.38
VPS50-207ENST00000458530 CHD2O14647 1828 aaKnown RBP12.65□□□□□ -0.39
VPS50-207ENST00000458530 SHPRHQ149N8 1683 aa12.64□□□□□ -0.39
VPS50-207ENST00000458530 ZNF772Q68DY9 489 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms