RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 SP7Q8TDD2 431 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-216ENST00000446646 SCAF11Q99590 1463 aaKnown RBP11.67□□□□□ -0.54
HDAC9-216ENST00000446646 CCDC18Q5T9S5 1454 aa11.66□□□□□ -0.54
HDAC9-216ENST00000446646 JCADQ9P266 1359 aa11.66□□□□□ -0.54
HDAC9-216ENST00000446646 PLEKHH2Q8IVE3 1493 aa11.65□□□□□ -0.54
HDAC9-216ENST00000446646 TXNDC2Q86VQ3 553 aa11.65□□□□□ -0.54
HDAC9-216ENST00000446646 FARP1Q9Y4F1 1045 aaPredicted RBP11.65□□□□□ -0.54
HDAC9-216ENST00000446646 CREBZFQ9NS37 354 aa11.64□□□□□ -0.55
HDAC9-216ENST00000446646 CCNB3Q8WWL7 1395 aa11.64□□□□□ -0.55
HDAC9-216ENST00000446646 ERVK-7P63135 1459 aa11.63□□□□□ -0.55
HDAC9-216ENST00000446646 EVX2Q03828 476 aa11.63□□□□□ -0.55
HDAC9-216ENST00000446646 ARHGAP23Q9P227 1491 aa11.63□□□□□ -0.55
HDAC9-216ENST00000446646 RTEL1-TNFRSF6BF6WH68 1400 aa11.62□□□□□ -0.55
HDAC9-216ENST00000446646 ABCC3O15438 1527 aa11.61□□□□□ -0.55
HDAC9-216ENST00000446646 UBR1Q8IWV7 1749 aa11.61□□□□□ -0.55
HDAC9-216ENST00000446646 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
HDAC9-216ENST00000446646 RXRBP28702 533 aa11.61□□□□□ -0.55
HDAC9-216ENST00000446646 PROSER2Q86WR7 435 aaPredicted RBP11.61□□□□□ -0.55
HDAC9-216ENST00000446646 COL16A1Q07092 1604 aaPredicted RBP11.6□□□□□ -0.55
HDAC9-216ENST00000446646 PHLPP1O60346 1717 aa11.6□□□□□ -0.55
HDAC9-216ENST00000446646 MEX3CQ5U5Q3 659 aaKnown RBP11.6□□□□□ -0.55
HDAC9-216ENST00000446646 ZNF772Q68DY9 489 aaPredicted RBP11.6□□□□□ -0.55
HDAC9-216ENST00000446646 SLC26A8Q96RN1 970 aa11.6□□□□□ -0.55
HDAC9-216ENST00000446646 SLAIN2Q9P270 581 aa11.6□□□□□ -0.55
HDAC9-216ENST00000446646 SLIT1O75093 1534 aa11.6□□□□□ -0.55
HDAC9-216ENST00000446646 SETBP1Q9Y6X0 1596 aa11.59□□□□□ -0.55
HDAC9-216ENST00000446646 KCNA6P17658 529 aa11.59□□□□□ -0.55
HDAC9-216ENST00000446646 RGS12O14924 1447 aa11.59□□□□□ -0.55
HDAC9-216ENST00000446646 TIAM1Q13009 1591 aa11.58□□□□□ -0.56
HDAC9-216ENST00000446646 NUTM2BA6NNL0 878 aaPredicted RBP11.56□□□□□ -0.56
HDAC9-216ENST00000446646 NUTM2EB1AL46 878 aaPredicted RBP11.56□□□□□ -0.56
HDAC9-216ENST00000446646 NUTM2AQ8IVF1 878 aaPredicted RBP11.56□□□□□ -0.56
HDAC9-216ENST00000446646 LRRC9Q6ZRR7 1453 aa11.56□□□□□ -0.56
HDAC9-216ENST00000446646 FYCO1Q9BQS8 1478 aa11.56□□□□□ -0.56
HDAC9-216ENST00000446646 PRDM15P57071 1507 aaPredicted RBP11.55□□□□□ -0.56
HDAC9-216ENST00000446646 CFAP65Q6ZU64 1925 aaKnown RBP11.55□□□□□ -0.56
HDAC9-216ENST00000446646 CDK12Q9NYV4 1490 aaPredicted RBP11.55□□□□□ -0.56
HDAC9-216ENST00000446646 AFF2P51816 1311 aa11.55□□□□□ -0.56
HDAC9-216ENST00000446646 SPATA31A6Q5VVP1 1343 aa11.55□□□□□ -0.56
HDAC9-216ENST00000446646 TMEM2Q9UHN6 1383 aa11.54□□□□□ -0.56
HDAC9-216ENST00000446646 MROH1Q8NDA8 1641 aa11.54□□□□□ -0.56
HDAC9-216ENST00000446646 CD44P16070 742 aaKnown RBP11.54□□□□□ -0.56
HDAC9-216ENST00000446646 CCDC141Q6ZP82 1450 aa11.54□□□□□ -0.56
HDAC9-216ENST00000446646 TET3O43151 1660 aa11.53□□□□□ -0.56
HDAC9-216ENST00000446646 EID1Q9Y6B2 187 aa11.53□□□□□ -0.56
HDAC9-216ENST00000446646 MSH6P52701 1360 aa11.53□□□□□ -0.56
HDAC9-216ENST00000446646 MTUS2Q5JR59 1369 aa11.52□□□□□ -0.57
HDAC9-216ENST00000446646 FGD6Q6ZV73 1430 aa11.52□□□□□ -0.57
HDAC9-216ENST00000446646 NUTM2DQ5VT03 806 aaPredicted RBP11.51□□□□□ -0.57
HDAC9-216ENST00000446646 PIK3C2BO00750 1634 aa11.5□□□□□ -0.57
HDAC9-216ENST00000446646 CAMSAP2Q08AD1 1489 aa11.5□□□□□ -0.57
HDAC9-216ENST00000446646 NWD1Q149M9 1564 aa11.5□□□□□ -0.57
HDAC9-216ENST00000446646 CEP152O94986 1710 aa11.49□□□□□ -0.57
HDAC9-216ENST00000446646 QTRT2Q9H974 415 aaKnown RBP11.49□□□□□ -0.57
HDAC9-216ENST00000446646 NKTRP30414 1462 aaKnown RBP11.49□□□□□ -0.57
HDAC9-216ENST00000446646 DIP2AQ14689 1571 aa11.49□□□□□ -0.57
HDAC9-216ENST00000446646 ZRANB1Q9UGI0 708 aa11.48□□□□□ -0.57
HDAC9-216ENST00000446646 MAST1Q9Y2H9 1570 aa11.48□□□□□ -0.57
HDAC9-216ENST00000446646 SHPRHQ149N8 1683 aa11.48□□□□□ -0.57
HDAC9-216ENST00000446646 AHDC1Q5TGY3 1603 aaPredicted RBP11.47□□□□□ -0.57
HDAC9-216ENST00000446646 RBM6P78332 1123 aaKnown RBP11.47□□□□□ -0.57
HDAC9-216ENST00000446646 IDI1Q13907 227 aa11.47□□□□□ -0.57
HDAC9-216ENST00000446646 MIER1Q8N108 512 aa11.47□□□□□ -0.57
HDAC9-216ENST00000446646 C8orf37Q96NL8 207 aa11.47□□□□□ -0.57
HDAC9-216ENST00000446646 KDM5AP29375 1690 aaKnown RBP11.46□□□□□ -0.57
HDAC9-216ENST00000446646 PLEKHG5O94827 1062 aa11.46□□□□□ -0.57
HDAC9-216ENST00000446646 MNX1P50219 401 aaPredicted RBP11.45□□□□□ -0.58
HDAC9-216ENST00000446646 BRINP3Q76B58 766 aa11.45□□□□□ -0.58
HDAC9-216ENST00000446646 DDX17Q92841 729 aaKnown RBP11.45□□□□□ -0.58
HDAC9-216ENST00000446646 CEP162Q5TB80 1403 aa11.44□□□□□ -0.58
HDAC9-216ENST00000446646 EFCAB6Q5THR3 1501 aa11.44□□□□□ -0.58
HDAC9-216ENST00000446646 ARHGAP31Q2M1Z3 1444 aa11.43□□□□□ -0.58
HDAC9-216ENST00000446646 PLCD3Q8N3E9 789 aa11.43□□□□□ -0.58
HDAC9-216ENST00000446646 BCANQ96GW7 911 aa11.43□□□□□ -0.58
HDAC9-216ENST00000446646 ATAD2Q6PL18 1390 aa11.42□□□□□ -0.58
HDAC9-216ENST00000446646 TSPY4P0CV99 314 aa11.42□□□□□ -0.58
HDAC9-216ENST00000446646 TSPY10P0CW01 314 aa11.42□□□□□ -0.58
HDAC9-216ENST00000446646 EHBP1L1Q8N3D4 1523 aa11.41□□□□□ -0.58
HDAC9-216ENST00000446646 ADAMTS2O95450 1211 aa11.41□□□□□ -0.58
HDAC9-216ENST00000446646 C14orf37Q86TY3 774 aa11.41□□□□□ -0.58
HDAC9-216ENST00000446646 ARHGEF5Q12774 1597 aa11.41□□□□□ -0.58
HDAC9-216ENST00000446646 PAK3O75914 559 aaPredicted RBP11.4□□□□□ -0.58
HDAC9-216ENST00000446646 RSPH4AQ5TD94 716 aa11.4□□□□□ -0.58
HDAC9-216ENST00000446646 GABBR2O75899 941 aa11.39□□□□□ -0.59
HDAC9-216ENST00000446646 SETD5Q9C0A6 1442 aa11.39□□□□□ -0.59
HDAC9-216ENST00000446646 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.39□□□□□ -0.59
HDAC9-216ENST00000446646 FBXO3Q9UK99 471 aa11.39□□□□□ -0.59
HDAC9-216ENST00000446646 EIF2AK4Q9P2K8 1649 aaKnown RBP11.38□□□□□ -0.59
HDAC9-216ENST00000446646 ZFYVE9O95405 1425 aa11.38□□□□□ -0.59
HDAC9-216ENST00000446646 UTRNP46939 3433 aa11.38□□□□□ -0.59
HDAC9-216ENST00000446646 ATF3P18847 181 aa11.38□□□□□ -0.59
HDAC9-216ENST00000446646 CADPS2Q86UW7 1296 aa11.38□□□□□ -0.59
HDAC9-216ENST00000446646 C19orf44Q9H6X5 657 aa11.38□□□□□ -0.59
HDAC9-216ENST00000446646 PNPLA6Q8IY17 1366 aa11.38□□□□□ -0.59
HDAC9-216ENST00000446646 CHD2O14647 1828 aaKnown RBP11.37□□□□□ -0.59
HDAC9-216ENST00000446646 ASXL1Q8IXJ9 1541 aa11.37□□□□□ -0.59
HDAC9-216ENST00000446646 DEFB132Q7Z7B7 95 aa11.37□□□□□ -0.59
HDAC9-216ENST00000446646 NGLY1Q96IV0 654 aa11.37□□□□□ -0.59
HDAC9-216ENST00000446646 ADGRB3O60242 1522 aa11.36□□□□□ -0.59
HDAC9-216ENST00000446646 PLEKHG1Q9ULL1 1385 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms