RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 ERVK-7P63135 1459 aa13.52□□□□□ -0.25
HDAC1-202ENST00000428704 PHLPP1O60346 1717 aa13.52□□□□□ -0.25
HDAC1-202ENST00000428704 MBD5Q9P267 1494 aa13.51□□□□□ -0.25
HDAC1-202ENST00000428704 ZRANB1Q9UGI0 708 aa13.5□□□□□ -0.25
HDAC1-202ENST00000428704 ARHGAP23Q9P227 1491 aa13.49□□□□□ -0.25
HDAC1-202ENST00000428704 FGD6Q6ZV73 1430 aa13.49□□□□□ -0.25
HDAC1-202ENST00000428704 SLIT1O75093 1534 aa13.49□□□□□ -0.25
HDAC1-202ENST00000428704 NUTM2BA6NNL0 878 aaPredicted RBP13.48□□□□□ -0.25
HDAC1-202ENST00000428704 NUTM2EB1AL46 878 aaPredicted RBP13.48□□□□□ -0.25
HDAC1-202ENST00000428704 NUTM2DQ5VT03 806 aaPredicted RBP13.48□□□□□ -0.25
HDAC1-202ENST00000428704 NUTM2AQ8IVF1 878 aaPredicted RBP13.48□□□□□ -0.25
HDAC1-202ENST00000428704 PRDM15P57071 1507 aaPredicted RBP13.47□□□□□ -0.25
HDAC1-202ENST00000428704 CAMSAP2Q08AD1 1489 aa13.47□□□□□ -0.25
HDAC1-202ENST00000428704 ABCC3O15438 1527 aa13.46□□□□□ -0.25
HDAC1-202ENST00000428704 SLC26A8Q96RN1 970 aa13.46□□□□□ -0.25
HDAC1-202ENST00000428704 UBR1Q8IWV7 1749 aa13.46□□□□□ -0.25
HDAC1-202ENST00000428704 COL16A1Q07092 1604 aaPredicted RBP13.46□□□□□ -0.26
HDAC1-202ENST00000428704 AFF2P51816 1311 aa13.45□□□□□ -0.26
HDAC1-202ENST00000428704 CCDC141Q6ZP82 1450 aa13.45□□□□□ -0.26
HDAC1-202ENST00000428704 KANK4Q5T7N3 995 aaPredicted RBP13.45□□□□□ -0.26
HDAC1-202ENST00000428704 RGS12O14924 1447 aa13.45□□□□□ -0.26
HDAC1-202ENST00000428704 STAG3Q9UJ98 1225 aa13.44□□□□□ -0.26
HDAC1-202ENST00000428704 TMEM2Q9UHN6 1383 aa13.44□□□□□ -0.26
HDAC1-202ENST00000428704 NKTRP30414 1462 aaKnown RBP13.43□□□□□ -0.26
HDAC1-202ENST00000428704 ARHGEF5Q12774 1597 aa13.43□□□□□ -0.26
HDAC1-202ENST00000428704 RBM6P78332 1123 aaKnown RBP13.42□□□□□ -0.26
HDAC1-202ENST00000428704 SETBP1Q9Y6X0 1596 aa13.41□□□□□ -0.26
HDAC1-202ENST00000428704 RSPH4AQ5TD94 716 aa13.41□□□□□ -0.26
HDAC1-202ENST00000428704 ATAD2Q6PL18 1390 aa13.41□□□□□ -0.26
HDAC1-202ENST00000428704 MYOM3Q5VTT5 1437 aa13.4□□□□□ -0.26
HDAC1-202ENST00000428704 TSPY4P0CV99 314 aa13.4□□□□□ -0.26
HDAC1-202ENST00000428704 TSPY10P0CW01 314 aa13.4□□□□□ -0.26
HDAC1-202ENST00000428704 BCANQ96GW7 911 aa13.4□□□□□ -0.26
HDAC1-202ENST00000428704 QTRT2Q9H974 415 aaKnown RBP13.4□□□□□ -0.26
HDAC1-202ENST00000428704 C14orf37Q86TY3 774 aa13.39□□□□□ -0.27
HDAC1-202ENST00000428704 CROCC2H7BZ55 1655 aa13.37□□□□□ -0.27
HDAC1-202ENST00000428704 SHPRHQ149N8 1683 aa13.37□□□□□ -0.27
HDAC1-202ENST00000428704 MAST1Q9Y2H9 1570 aa13.37□□□□□ -0.27
HDAC1-202ENST00000428704 C8orf37Q96NL8 207 aa13.37□□□□□ -0.27
HDAC1-202ENST00000428704 NWD1Q149M9 1564 aa13.37□□□□□ -0.27
HDAC1-202ENST00000428704 AHDC1Q5TGY3 1603 aaPredicted RBP13.36□□□□□ -0.27
HDAC1-202ENST00000428704 NGLY1Q96IV0 654 aa13.36□□□□□ -0.27
HDAC1-202ENST00000428704 PTPN23Q9H3S7 1636 aa13.35□□□□□ -0.27
HDAC1-202ENST00000428704 TET3O43151 1660 aa13.35□□□□□ -0.27
HDAC1-202ENST00000428704 CADPS2Q86UW7 1296 aa13.35□□□□□ -0.27
HDAC1-202ENST00000428704 EFCAB6Q5THR3 1501 aa13.34□□□□□ -0.27
HDAC1-202ENST00000428704 TRIM26Q12899 539 aaPredicted RBP13.34□□□□□ -0.27
HDAC1-202ENST00000428704 KDM5AP29375 1690 aaKnown RBP13.34□□□□□ -0.27
HDAC1-202ENST00000428704 PIK3C2BO00750 1634 aa13.33□□□□□ -0.28
HDAC1-202ENST00000428704 ATF3P18847 181 aa13.33□□□□□ -0.28
HDAC1-202ENST00000428704 ARHGAP31Q2M1Z3 1444 aa13.32□□□□□ -0.28
HDAC1-202ENST00000428704 NCOA3Q9Y6Q9 1424 aa13.31□□□□□ -0.28
HDAC1-202ENST00000428704 BRINP3Q76B58 766 aa13.31□□□□□ -0.28
HDAC1-202ENST00000428704 MROH1Q8NDA8 1641 aa13.31□□□□□ -0.28
HDAC1-202ENST00000428704 DIP2AQ14689 1571 aa13.3□□□□□ -0.28
HDAC1-202ENST00000428704 IDI1Q13907 227 aa13.3□□□□□ -0.28
HDAC1-202ENST00000428704 CCDC125Q86Z20 511 aa13.3□□□□□ -0.28
HDAC1-202ENST00000428704 PCGF6Q9BYE7 350 aa13.3□□□□□ -0.28
HDAC1-202ENST00000428704 C19orf44Q9H6X5 657 aa13.3□□□□□ -0.28
HDAC1-202ENST00000428704 CEP152O94986 1710 aa13.3□□□□□ -0.28
HDAC1-202ENST00000428704 EIF2AK4Q9P2K8 1649 aaKnown RBP13.29□□□□□ -0.28
HDAC1-202ENST00000428704 LRRC59Q96AG4 307 aaKnown RBP13.28□□□□□ -0.28
HDAC1-202ENST00000428704 SETD5Q9C0A6 1442 aa13.28□□□□□ -0.28
HDAC1-202ENST00000428704 CFAP65Q6ZU64 1925 aaKnown RBP13.27□□□□□ -0.28
HDAC1-202ENST00000428704 PPP1R15AO75807 674 aaPredicted RBP13.27□□□□□ -0.29
HDAC1-202ENST00000428704 ABCC5O15440 1437 aa13.27□□□□□ -0.29
HDAC1-202ENST00000428704 SPDYE2BA6NHP3 402 aa13.26□□□□□ -0.29
HDAC1-202ENST00000428704 ADAMTS2O95450 1211 aa13.26□□□□□ -0.29
HDAC1-202ENST00000428704 SPDYE6P0CI01 402 aa13.26□□□□□ -0.29
HDAC1-202ENST00000428704 SPDYE2Q495Y8 402 aa13.26□□□□□ -0.29
HDAC1-202ENST00000428704 RBM42Q9BTD8 480 aaKnown RBP13.26□□□□□ -0.29
HDAC1-202ENST00000428704 DAPK1P53355 1430 aa13.25□□□□□ -0.29
HDAC1-202ENST00000428704 PLEKHG1Q9ULL1 1385 aa13.25□□□□□ -0.29
HDAC1-202ENST00000428704 USP21Q9UK80 565 aa13.25□□□□□ -0.29
HDAC1-202ENST00000428704 TRPC5Q9UL62 973 aaPredicted RBP13.25□□□□□ -0.29
HDAC1-202ENST00000428704 PNPLA6Q8IY17 1366 aa13.24□□□□□ -0.29
HDAC1-202ENST00000428704 EP400Q96L91 3159 aa13.24□□□□□ -0.29
HDAC1-202ENST00000428704 DUOX2Q9NRD8 1548 aa13.23□□□□□ -0.29
HDAC1-202ENST00000428704 SPDYE4A6NLX3 237 aa13.23□□□□□ -0.29
HDAC1-202ENST00000428704 FKBP8Q14318 412 aa13.23□□□□□ -0.29
HDAC1-202ENST00000428704 ADGRB3O60242 1522 aa13.23□□□□□ -0.29
HDAC1-202ENST00000428704 ASXL1Q8IXJ9 1541 aa13.23□□□□□ -0.29
HDAC1-202ENST00000428704 KANK1Q14678 1352 aa13.22□□□□□ -0.29
HDAC1-202ENST00000428704 HDGFP51858 240 aaKnown RBP13.22□□□□□ -0.29
HDAC1-202ENST00000428704 TBX22Q9Y458 520 aa13.22□□□□□ -0.29
HDAC1-202ENST00000428704 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.22□□□□□ -0.29
HDAC1-202ENST00000428704 ZNF692Q9BU19 519 aaPredicted RBP13.2□□□□□ -0.3
HDAC1-202ENST00000428704 ADGRL2O95490 1459 aa13.19□□□□□ -0.3
HDAC1-202ENST00000428704 CHD2O14647 1828 aaKnown RBP13.19□□□□□ -0.3
HDAC1-202ENST00000428704 HRCP23327 699 aa13.19□□□□□ -0.3
HDAC1-202ENST00000428704 DDX17Q92841 729 aaKnown RBP13.19□□□□□ -0.3
HDAC1-202ENST00000428704 SLC52A1Q9NWF4 448 aa13.19□□□□□ -0.3
HDAC1-202ENST00000428704 LRP5O75197 1615 aa13.19□□□□□ -0.3
HDAC1-202ENST00000428704 KIF15Q9NS87 1388 aa13.19□□□□□ -0.3
HDAC1-202ENST00000428704 ZFYVE9O95405 1425 aa13.18□□□□□ -0.3
HDAC1-202ENST00000428704 DCCP43146 1447 aa13.18□□□□□ -0.3
HDAC1-202ENST00000428704 BLMP54132 1417 aaPredicted RBP13.18□□□□□ -0.3
HDAC1-202ENST00000428704 ERBINQ96RT1 1412 aa13.18□□□□□ -0.3
HDAC1-202ENST00000428704 RIMS2Q9UQ26 1411 aa13.18□□□□□ -0.3
HDAC1-202ENST00000428704 ATRNO75882 1429 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms