RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 C2orf72A6NCS6 295 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 PDIA6Q15084 440 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 IQSEC2Q5JU85 1478 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 TSPOAP1O95153 1857 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 SNRKQ9NRH2 765 aa4.11□□□□□ -1.75
MCF2-204ENST00000414978 MINK1Q8N4C8 1332 aaPredicted RBP4.11□□□□□ -1.75
MCF2-204ENST00000414978 CDCA8Q53HL2 280 aa4.1□□□□□ -1.75
MCF2-204ENST00000414978 FGD5Q6ZNL6 1462 aa4.1□□□□□ -1.75
MCF2-204ENST00000414978 PRIM1P49642 420 aaKnown RBP4.1□□□□□ -1.75
MCF2-204ENST00000414978 MAP3K7O43318 606 aa4.1□□□□□ -1.75
MCF2-204ENST00000414978 TSC1Q92574 1164 aa4.1□□□□□ -1.75
MCF2-204ENST00000414978 MS4A3Q96HJ5 214 aa4.1□□□□□ -1.75
MCF2-204ENST00000414978 PHOX2BQ99453 314 aa4.1□□□□□ -1.75
MCF2-204ENST00000414978 UHRF1BP1LA0JNW5 1464 aa4.09□□□□□ -1.75
MCF2-204ENST00000414978 CCDC88BA6NC98 1476 aa4.09□□□□□ -1.75
MCF2-204ENST00000414978 CD44P16070 742 aaKnown RBP4.09□□□□□ -1.75
MCF2-204ENST00000414978 MFAP1P55081 439 aaKnown RBP4.09□□□□□ -1.75
MCF2-204ENST00000414978 PLSCR2Q9NRY7 297 aa4.09□□□□□ -1.75
MCF2-204ENST00000414978 CUX1P39880 1505 aa4.09□□□□□ -1.75
MCF2-204ENST00000414978 CALR3Q96L12 384 aaKnown RBP4.09□□□□□ -1.75
MCF2-204ENST00000414978 LMTK3Q96Q04 1460 aa4.09□□□□□ -1.76
MCF2-204ENST00000414978 SOGA1O94964 1423 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 HIC1Q14526 733 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 BCORL1Q5H9F3 1711 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 TRIM35Q9UPQ4 493 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 TEX14Q8IWB6 1497 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.08□□□□□ -1.76
MCF2-204ENST00000414978 POM121CA8CG34 1229 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 SOCS7O14512 581 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 OSBPP22059 807 aa4.08□□□□□ -1.76
MCF2-204ENST00000414978 TSR1Q2NL82 804 aaKnown RBP4.08□□□□□ -1.76
MCF2-204ENST00000414978 GPR37L1O60883 481 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 FCHSD2O94868 740 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 SSTR3P32745 418 aaPredicted RBP4.07□□□□□ -1.76
MCF2-204ENST00000414978 AMHR2Q16671 573 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 CUL7Q14999 1698 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 MICALL2Q8IY33 904 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 USP35Q9P2H5 1018 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 PCF11O94913 1555 aaKnown RBP4.07□□□□□ -1.76
MCF2-204ENST00000414978 TXNDC2Q86VQ3 553 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 RAD54L2Q9Y4B4 1467 aa4.07□□□□□ -1.76
MCF2-204ENST00000414978 G3V3G9 751 aa4.06□□□□□ -1.76
MCF2-204ENST00000414978 EIF5BO60841 1220 aaKnown RBP4.06□□□□□ -1.76
MCF2-204ENST00000414978 FHAD1B1AJZ9 1412 aa4.06□□□□□ -1.76
MCF2-204ENST00000414978 PLB1Q6P1J6 1458 aa4.06□□□□□ -1.76
MCF2-204ENST00000414978 COG6Q9Y2V7 657 aa4.06□□□□□ -1.76
MCF2-204ENST00000414978 TBC1D2BQ9UPU7 963 aa4.05□□□□□ -1.76
MCF2-204ENST00000414978 TTBK1Q5TCY1 1321 aaPredicted RBP4.05□□□□□ -1.76
MCF2-204ENST00000414978 PTGDRQ13258 359 aa4.05□□□□□ -1.76
MCF2-204ENST00000414978 KIAA1522Q9P206 1035 aaPredicted RBP4.05□□□□□ -1.76
MCF2-204ENST00000414978 KIF21BO75037 1637 aa4.05□□□□□ -1.76
MCF2-204ENST00000414978 MAGI3Q5TCQ9 1506 aa4.04□□□□□ -1.76
MCF2-204ENST00000414978 TTLL13PA6NNM8 815 aa4.04□□□□□ -1.76
MCF2-204ENST00000414978 SPDYE16A6NNV3 312 aaPredicted RBP4.04□□□□□ -1.76
MCF2-204ENST00000414978 AP1G2O75843 785 aa4.04□□□□□ -1.76
MCF2-204ENST00000414978 PELP1Q8IZL8 1130 aaKnown RBP4.04□□□□□ -1.76
MCF2-204ENST00000414978 PREX1Q8TCU6 1659 aa4.04□□□□□ -1.76
MCF2-204ENST00000414978 SERPINA10Q9UK55 444 aa4.04□□□□□ -1.76
MCF2-204ENST00000414978 FOXK1P85037 733 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 GLMNQ92990 594 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 GPCPD1Q9NPB8 672 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 ABCC2Q92887 1545 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 AMOTL2Q9Y2J4 779 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 ZCCHC11Q5TAX3 1644 aaKnown RBP4.03□□□□□ -1.76
MCF2-204ENST00000414978 EVI5O60447 810 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 MYSM1Q5VVJ2 828 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 LIMD1Q9UGP4 676 aa4.03□□□□□ -1.76
MCF2-204ENST00000414978 ARAP3Q8WWN8 1544 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 CLCN1P35523 988 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 QPCTQ16769 361 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 TBC1D12O60347 775 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 CLK2P49760 499 aaKnown RBP4.02□□□□□ -1.77
MCF2-204ENST00000414978 TTC37Q6PGP7 1564 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 NUTM2BA6NNL0 878 aaPredicted RBP4.02□□□□□ -1.77
MCF2-204ENST00000414978 NUTM2EB1AL46 878 aaPredicted RBP4.02□□□□□ -1.77
MCF2-204ENST00000414978 RFC5P40937 340 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 NUTM2DQ5VT03 806 aaPredicted RBP4.02□□□□□ -1.77
MCF2-204ENST00000414978 NUTM2AQ8IVF1 878 aaPredicted RBP4.02□□□□□ -1.77
MCF2-204ENST00000414978 KDM5BQ9UGL1 1544 aa4.02□□□□□ -1.77
MCF2-204ENST00000414978 EPRSP07814 1512 aaKnown RBP4.01□□□□□ -1.77
MCF2-204ENST00000414978 GALR2O43603 387 aaPredicted RBP4.01□□□□□ -1.77
MCF2-204ENST00000414978 DNAJC14Q6Y2X3 702 aaPredicted RBP4.01□□□□□ -1.77
MCF2-204ENST00000414978 SH3D19Q5HYK7 790 aa4.01□□□□□ -1.77
MCF2-204ENST00000414978 ACIN1Q9UKV3 1341 aaKnown RBP4.01□□□□□ -1.77
MCF2-204ENST00000414978 C7P10643 843 aa4□□□□□ -1.77
MCF2-204ENST00000414978 SKIV2LQ15477 1246 aaKnown RBP4□□□□□ -1.77
MCF2-204ENST00000414978 TMEM92Q6UXU6 159 aa4□□□□□ -1.77
MCF2-204ENST00000414978 CCDC125Q86Z20 511 aa4□□□□□ -1.77
MCF2-204ENST00000414978 MTMR14Q8NCE2 650 aa4□□□□□ -1.77
MCF2-204ENST00000414978 CHMP7Q8WUX9 453 aaPredicted RBP4□□□□□ -1.77
MCF2-204ENST00000414978 BMP2KQ9NSY1 1161 aaPredicted RBP4□□□□□ -1.77
MCF2-204ENST00000414978 PRG4Q92954 1404 aaPredicted RBP4□□□□□ -1.77
MCF2-204ENST00000414978 HDGFL1Q5TGJ6 251 aa4□□□□□ -1.77
MCF2-204ENST00000414978 FAM177A1Q8N128 213 aaPredicted RBP4□□□□□ -1.77
MCF2-204ENST00000414978 TBC1D2Q9BYX2 928 aa4□□□□□ -1.77
MCF2-204ENST00000414978 TDRD9Q8NDG6 1382 aaKnown RBP4□□□□□ -1.77
MCF2-204ENST00000414978 ARHGEF40Q8TER5 1519 aa4□□□□□ -1.77
MCF2-204ENST00000414978 STRCQ7RTU9 1775 aa4□□□□□ -1.77
MCF2-204ENST00000414978 TMEM88BA6NKF7 163 aa4□□□□□ -1.77
MCF2-204ENST00000414978 DDX11L8A8MPP1 907 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms