RNA–Protein interactions for RNA: ENST00000381020.7

CDX2-201, Transcript of caudal type homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX2, Length 4,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-201ENST00000381020 PRAM1Q96QH2 718 aa16.16■□□□□ 0.18
CDX2-201ENST00000381020 IDI1Q13907 227 aa16.16■□□□□ 0.18
CDX2-201ENST00000381020 ABCA8O94911 1581 aa16.15■□□□□ 0.18
CDX2-201ENST00000381020 MBD5Q9P267 1494 aa16.15■□□□□ 0.18
CDX2-201ENST00000381020 SHANK2Q9UPX8 1470 aa16.14■□□□□ 0.17
CDX2-201ENST00000381020 WDR7Q9Y4E6 1490 aa16.14■□□□□ 0.17
CDX2-201ENST00000381020 PRAG1Q86YV5 1406 aa16.13■□□□□ 0.17
CDX2-201ENST00000381020 TESK2Q96S53 571 aa16.13■□□□□ 0.17
CDX2-201ENST00000381020 ERCC6L2Q5T890 1561 aa16.12■□□□□ 0.17
CDX2-201ENST00000381020 RALGAPBQ86X10 1494 aa16.12■□□□□ 0.17
CDX2-201ENST00000381020 GCC2Q8IWJ2 1684 aa16.12■□□□□ 0.17
CDX2-201ENST00000381020 PAK3O75914 559 aaPredicted RBP16.12■□□□□ 0.17
CDX2-201ENST00000381020 SLC52A1Q9NWF4 448 aa16.11■□□□□ 0.17
CDX2-201ENST00000381020 DUOX2Q9NRD8 1548 aa16.11■□□□□ 0.17
CDX2-201ENST00000381020 LRRIQ1Q96JM4 1722 aa16.11■□□□□ 0.17
CDX2-201ENST00000381020 ELL2O00472 640 aaPredicted RBP16.1■□□□□ 0.17
CDX2-201ENST00000381020 KDM5BQ9UGL1 1544 aa16.1■□□□□ 0.17
CDX2-201ENST00000381020 EID1Q9Y6B2 187 aa16.1■□□□□ 0.17
CDX2-201ENST00000381020 PNNQ9H307 717 aaKnown RBP16.09■□□□□ 0.17
CDX2-201ENST00000381020 MYH16Q9H6N6 1097 aa16.09■□□□□ 0.17
CDX2-201ENST00000381020 E9PSI1 815 aa16.09■□□□□ 0.17
CDX2-201ENST00000381020 COG6Q9Y2V7 657 aa16.09■□□□□ 0.17
CDX2-201ENST00000381020 NOP58Q9Y2X3 529 aaKnown RBP16.09■□□□□ 0.17
CDX2-201ENST00000381020 DENND4BO75064 1496 aaPredicted RBP16.09■□□□□ 0.17
CDX2-201ENST00000381020 TXNDC2Q86VQ3 553 aa16.09■□□□□ 0.17
CDX2-201ENST00000381020 SMC4Q9NTJ3 1288 aa16.09■□□□□ 0.17
CDX2-201ENST00000381020 NOS1P29475 1434 aa16.08■□□□□ 0.17
CDX2-201ENST00000381020 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.08■□□□□ 0.17
CDX2-201ENST00000381020 TCP11L2Q8N4U5 519 aa16.08■□□□□ 0.16
CDX2-201ENST00000381020 NGDNQ8NEJ9 315 aaKnown RBP16.07■□□□□ 0.16
CDX2-201ENST00000381020 CABP1Q9NZU7 370 aa16.07■□□□□ 0.16
CDX2-201ENST00000381020 TCERG1O14776 1098 aaKnown RBP16.06■□□□□ 0.16
CDX2-201ENST00000381020 ITPRIPQ8IWB1 547 aa16.05■□□□□ 0.16
CDX2-201ENST00000381020 HMOX1P09601 288 aa16.05■□□□□ 0.16
CDX2-201ENST00000381020 WAPLQ7Z5K2 1190 aa16.05■□□□□ 0.16
CDX2-201ENST00000381020 RUNDC1Q96C34 613 aa16.05■□□□□ 0.16
CDX2-201ENST00000381020 SPATA31E1Q6ZUB1 1445 aa16.05■□□□□ 0.16
CDX2-201ENST00000381020 SMG6Q86US8 1419 aaKnown RBP16.04■□□□□ 0.16
CDX2-201ENST00000381020 A2MP01023 1474 aa16.04■□□□□ 0.16
CDX2-201ENST00000381020 PER1O15534 1290 aaPredicted RBP16.04■□□□□ 0.16
CDX2-201ENST00000381020 DIAPH1O60610 1272 aaKnown RBP16.04■□□□□ 0.16
CDX2-201ENST00000381020 CDK19Q9BWU1 502 aa16.04■□□□□ 0.16
CDX2-201ENST00000381020 HSP90AA1P07900 732 aaKnown RBP16.03■□□□□ 0.16
CDX2-201ENST00000381020 CHD1O14646 1710 aa16.03■□□□□ 0.16
CDX2-201ENST00000381020 COG3Q96JB2 828 aa16.03■□□□□ 0.16
CDX2-201ENST00000381020 RPGRIP1LQ68CZ1 1315 aa16.02■□□□□ 0.16
CDX2-201ENST00000381020 SAMD9LQ8IVG5 1584 aa16.02■□□□□ 0.16
CDX2-201ENST00000381020 BCAR3O75815 825 aa16.02■□□□□ 0.16
CDX2-201ENST00000381020 LTV1Q96GA3 475 aaPredicted RBP16.02■□□□□ 0.16
CDX2-201ENST00000381020 SCAF11Q99590 1463 aaKnown RBP16.02■□□□□ 0.15
CDX2-201ENST00000381020 RIPK4P57078 832 aa16.02■□□□□ 0.15
CDX2-201ENST00000381020 SLC26A8Q96RN1 970 aa16.02■□□□□ 0.15
CDX2-201ENST00000381020 PANK1Q8TE04 598 aa16.01■□□□□ 0.15
CDX2-201ENST00000381020 C14orf93Q9H972 538 aaKnown RBP16.01■□□□□ 0.15
CDX2-201ENST00000381020 TTC37Q6PGP7 1564 aa16.01■□□□□ 0.15
CDX2-201ENST00000381020 NSD3Q9BZ95 1437 aa16.01■□□□□ 0.15
CDX2-201ENST00000381020 UHRF1BP1Q6BDS2 1440 aa16■□□□□ 0.15
CDX2-201ENST00000381020 AMER1Q5JTC6 1135 aaPredicted RBP16■□□□□ 0.15
CDX2-201ENST00000381020 PDE4AP27815 886 aa16■□□□□ 0.15
CDX2-201ENST00000381020 MS4A1P11836 297 aa15.99■□□□□ 0.15
CDX2-201ENST00000381020 DDRGK1Q96HY6 314 aa15.99■□□□□ 0.15
CDX2-201ENST00000381020 ARXQ96QS3 562 aa15.99■□□□□ 0.15
CDX2-201ENST00000381020 ARHGEF12Q9NZN5 1544 aa15.98■□□□□ 0.15
CDX2-201ENST00000381020 SKAP1Q86WV1 359 aa15.98■□□□□ 0.15
CDX2-201ENST00000381020 CFAP65Q6ZU64 1925 aaKnown RBP15.98■□□□□ 0.15
CDX2-201ENST00000381020 ZNF518AQ6AHZ1 1483 aa15.98■□□□□ 0.15
CDX2-201ENST00000381020 APBB1O00213 710 aa15.98■□□□□ 0.15
CDX2-201ENST00000381020 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.98■□□□□ 0.15
CDX2-201ENST00000381020 C20orf194Q5TEA3 1177 aa15.97■□□□□ 0.15
CDX2-201ENST00000381020 AMPHP49418 695 aa15.97■□□□□ 0.15
CDX2-201ENST00000381020 CEBPAP49715 358 aaPredicted RBP15.97■□□□□ 0.15
CDX2-201ENST00000381020 RTF1Q92541 710 aaKnown RBP15.97■□□□□ 0.15
CDX2-201ENST00000381020 RTEL1-TNFRSF6BF6WH68 1400 aa15.96■□□□□ 0.15
CDX2-201ENST00000381020 IPO8O15397 1037 aaKnown RBP15.96■□□□□ 0.15
CDX2-201ENST00000381020 TSR2Q969E8 191 aaKnown RBP15.96■□□□□ 0.15
CDX2-201ENST00000381020 NUTM2GQ5VZR2 741 aa15.96■□□□□ 0.15
CDX2-201ENST00000381020 ADGBQ8N7X0 1667 aa15.95■□□□□ 0.14
CDX2-201ENST00000381020 FBLN1P23142 703 aa15.95■□□□□ 0.14
CDX2-201ENST00000381020 CDC42BPAQ5VT25 1732 aa15.95■□□□□ 0.14
CDX2-201ENST00000381020 PMFBP1Q8TBY8 1022 aa15.95■□□□□ 0.14
CDX2-201ENST00000381020 ARHGEF5Q12774 1597 aa15.95■□□□□ 0.14
CDX2-201ENST00000381020 CARD14Q9BXL6 1004 aa15.94■□□□□ 0.14
CDX2-201ENST00000381020 PARD3Q8TEW0 1356 aa15.94■□□□□ 0.14
CDX2-201ENST00000381020 CENPQQ7L2Z9 268 aaPredicted RBP15.94■□□□□ 0.14
CDX2-201ENST00000381020 RWDD1Q9H446 243 aaPredicted RBP15.94■□□□□ 0.14
CDX2-201ENST00000381020 IPO9Q96P70 1041 aaKnown RBP15.93■□□□□ 0.14
CDX2-201ENST00000381020 SLC4A3P48751 1232 aa15.93■□□□□ 0.14
CDX2-201ENST00000381020 PRKAR2BP31323 418 aa15.92■□□□□ 0.14
CDX2-201ENST00000381020 PLA2R1Q13018 1463 aa15.92■□□□□ 0.14
CDX2-201ENST00000381020 ZKSCAN2Q63HK3 967 aa15.92■□□□□ 0.14
CDX2-201ENST00000381020 ATP7AQ04656 1500 aa15.92■□□□□ 0.14
CDX2-201ENST00000381020 WWC1Q8IX03 1113 aa15.92■□□□□ 0.14
CDX2-201ENST00000381020 SLFN5Q08AF3 891 aa15.91■□□□□ 0.14
CDX2-201ENST00000381020 CALD1Q05682 793 aaKnown RBP15.91■□□□□ 0.14
CDX2-201ENST00000381020 NGEFQ8N5V2 710 aa15.91■□□□□ 0.14
CDX2-201ENST00000381020 SPRYD3Q8NCJ5 442 aa15.91■□□□□ 0.14
CDX2-201ENST00000381020 HAP1P54257 671 aaPredicted RBP15.9■□□□□ 0.14
CDX2-201ENST00000381020 BECN1Q14457 450 aa15.9■□□□□ 0.14
CDX2-201ENST00000381020 A0A0G2JS52 829 aa15.9■□□□□ 0.14
CDX2-201ENST00000381020 EXOSC9Q06265 439 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms