RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 ZNF518AQ6AHZ1 1483 aa14.51□□□□□ -0.09
NEDD9-201ENST00000379433 RTEL1-TNFRSF6BF6WH68 1400 aa14.51□□□□□ -0.09
NEDD9-201ENST00000379433 ABCA9Q8IUA7 1624 aa14.49□□□□□ -0.09
NEDD9-201ENST00000379433 YEATS2Q9ULM3 1422 aa14.49□□□□□ -0.09
NEDD9-201ENST00000379433 UNC13BO14795 1591 aa14.48□□□□□ -0.09
NEDD9-201ENST00000379433 BRD2P25440 801 aaKnown RBP14.48□□□□□ -0.09
NEDD9-201ENST00000379433 IQGAP3Q86VI3 1631 aa14.47□□□□□ -0.09
NEDD9-201ENST00000379433 IDI1Q13907 227 aa14.47□□□□□ -0.09
NEDD9-201ENST00000379433 KTN1Q86UP2 1357 aaKnown RBP14.47□□□□□ -0.09
NEDD9-201ENST00000379433 TSPOAP1O95153 1857 aa14.47□□□□□ -0.09
NEDD9-201ENST00000379433 PNISRQ8TF01 805 aaKnown RBP14.46□□□□□ -0.09
NEDD9-201ENST00000379433 E9PCH4 1651 aa14.46□□□□□ -0.09
NEDD9-201ENST00000379433 POGZQ7Z3K3 1410 aa14.46□□□□□ -0.09
NEDD9-201ENST00000379433 PAXIP1Q6ZW49 1069 aaPredicted RBP14.46□□□□□ -0.1
NEDD9-201ENST00000379433 ESF1Q9H501 851 aaKnown RBP14.46□□□□□ -0.1
NEDD9-201ENST00000379433 NOS1P29475 1434 aa14.45□□□□□ -0.1
NEDD9-201ENST00000379433 MYBBP1AQ9BQG0 1328 aaKnown RBP14.45□□□□□ -0.1
NEDD9-201ENST00000379433 TRHP20396 242 aaPredicted RBP14.44□□□□□ -0.1
NEDD9-201ENST00000379433 B4GALNT3Q6L9W6 998 aa14.44□□□□□ -0.1
NEDD9-201ENST00000379433 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.43□□□□□ -0.1
NEDD9-201ENST00000379433 PER1O15534 1290 aaPredicted RBP14.43□□□□□ -0.1
NEDD9-201ENST00000379433 NPATQ14207 1427 aa14.42□□□□□ -0.1
NEDD9-201ENST00000379433 RALBP1Q15311 655 aa14.42□□□□□ -0.1
NEDD9-201ENST00000379433 KIDINS220Q9ULH0 1771 aa14.42□□□□□ -0.1
NEDD9-201ENST00000379433 NLRP13Q86W25 1043 aa14.42□□□□□ -0.1
NEDD9-201ENST00000379433 CCDC146Q8IYE0 955 aa14.42□□□□□ -0.1
NEDD9-201ENST00000379433 SLC12A5Q9H2X9 1139 aa14.42□□□□□ -0.1
NEDD9-201ENST00000379433 PRDM15P57071 1507 aaPredicted RBP14.42□□□□□ -0.1
NEDD9-201ENST00000379433 CLTCL1P53675 1640 aa14.41□□□□□ -0.1
NEDD9-201ENST00000379433 ZBED9Q6R2W3 1325 aa14.41□□□□□ -0.1
NEDD9-201ENST00000379433 CDCA7LQ96GN5 454 aa14.4□□□□□ -0.1
NEDD9-201ENST00000379433 INO80Q9ULG1 1556 aaPredicted RBP14.39□□□□□ -0.11
NEDD9-201ENST00000379433 MAGI2Q86UL8 1455 aa14.39□□□□□ -0.11
NEDD9-201ENST00000379433 NEUROD2Q15784 382 aa14.39□□□□□ -0.11
NEDD9-201ENST00000379433 CABP2Q9NPB3 220 aa14.39□□□□□ -0.11
NEDD9-201ENST00000379433 TRPM1Q7Z4N2 1603 aa14.39□□□□□ -0.11
NEDD9-201ENST00000379433 WDR43Q15061 677 aaKnown RBP eCLIP14.38□□□□□ -0.11
NEDD9-201ENST00000379433 MINK1Q8N4C8 1332 aaPredicted RBP14.38□□□□□ -0.11
NEDD9-201ENST00000379433 SRPK2P78362 688 aaKnown RBP14.38□□□□□ -0.11
NEDD9-201ENST00000379433 ARAP3Q8WWN8 1544 aa14.38□□□□□ -0.11
NEDD9-201ENST00000379433 CENPJQ9HC77 1338 aaPredicted RBP14.37□□□□□ -0.11
NEDD9-201ENST00000379433 CDK11BP21127 795 aaKnown RBP14.37□□□□□ -0.11
NEDD9-201ENST00000379433 CDCA8Q53HL2 280 aa14.37□□□□□ -0.11
NEDD9-201ENST00000379433 POGKQ9P215 609 aa14.37□□□□□ -0.11
NEDD9-201ENST00000379433 ADAMTS8Q9UP79 889 aa14.37□□□□□ -0.11
NEDD9-201ENST00000379433 CEP152O94986 1710 aa14.37□□□□□ -0.11
NEDD9-201ENST00000379433 PTPRTO14522 1441 aa14.37□□□□□ -0.11
NEDD9-201ENST00000379433 GPRASP1Q5JY77 1395 aa14.37□□□□□ -0.11
NEDD9-201ENST00000379433 TRPM2O94759 1503 aa14.36□□□□□ -0.11
NEDD9-201ENST00000379433 DEKP35659 375 aaKnown RBP14.35□□□□□ -0.11
NEDD9-201ENST00000379433 NUTM2FA1L443 756 aa14.35□□□□□ -0.11
NEDD9-201ENST00000379433 VGFO15240 615 aaPredicted RBP14.35□□□□□ -0.11
NEDD9-201ENST00000379433 RIMBP3CA6NJZ7 1639 aa14.35□□□□□ -0.11
NEDD9-201ENST00000379433 RIMBP3BA6NNM3 1639 aa14.35□□□□□ -0.11
NEDD9-201ENST00000379433 RIMBP3Q9UFD9 1639 aa14.35□□□□□ -0.11
NEDD9-201ENST00000379433 SPHKAPQ2M3C7 1700 aa14.34□□□□□ -0.11
NEDD9-201ENST00000379433 EIF3AQ14152 1382 aaKnown RBP14.34□□□□□ -0.11
NEDD9-201ENST00000379433 CEBPAP49715 358 aaPredicted RBP14.34□□□□□ -0.11
NEDD9-201ENST00000379433 SCAF11Q99590 1463 aaKnown RBP14.34□□□□□ -0.11
NEDD9-201ENST00000379433 COL17A1Q9UMD9 1497 aaPredicted RBP14.34□□□□□ -0.11
NEDD9-201ENST00000379433 PPP2R1AP30153 589 aa14.33□□□□□ -0.11
NEDD9-201ENST00000379433 PLIN1O60240 522 aa14.33□□□□□ -0.12
NEDD9-201ENST00000379433 CARD14Q9BXL6 1004 aa14.33□□□□□ -0.12
NEDD9-201ENST00000379433 TSHZ2Q9NRE2 1034 aa14.33□□□□□ -0.12
NEDD9-201ENST00000379433 PPRC1Q5VV67 1664 aaKnown RBP14.33□□□□□ -0.12
NEDD9-201ENST00000379433 AAMPQ13685 434 aa14.33□□□□□ -0.12
NEDD9-201ENST00000379433 TET3O43151 1660 aa14.33□□□□□ -0.12
NEDD9-201ENST00000379433 HECW2Q9P2P5 1572 aa14.32□□□□□ -0.12
NEDD9-201ENST00000379433 MLH3Q9UHC1 1453 aa14.32□□□□□ -0.12
NEDD9-201ENST00000379433 NUDCQ9Y266 331 aa14.32□□□□□ -0.12
NEDD9-201ENST00000379433 ABCA6Q8N139 1617 aa14.32□□□□□ -0.12
NEDD9-201ENST00000379433 MROH1Q8NDA8 1641 aa14.31□□□□□ -0.12
NEDD9-201ENST00000379433 PPM1GO15355 546 aaPredicted RBP14.31□□□□□ -0.12
NEDD9-201ENST00000379433 PRAM1Q96QH2 718 aa14.31□□□□□ -0.12
NEDD9-201ENST00000379433 FRMPD1Q5SYB0 1578 aa14.31□□□□□ -0.12
NEDD9-201ENST00000379433 C14orf93Q9H972 538 aaKnown RBP14.31□□□□□ -0.12
NEDD9-201ENST00000379433 EFCAB6Q5THR3 1501 aa14.31□□□□□ -0.12
NEDD9-201ENST00000379433 BRD4O60885 1362 aaPredicted RBP14.3□□□□□ -0.12
NEDD9-201ENST00000379433 WAPLQ7Z5K2 1190 aa14.3□□□□□ -0.12
NEDD9-201ENST00000379433 MORC1Q86VD1 984 aa14.3□□□□□ -0.12
NEDD9-201ENST00000379433 FBXO3Q9UK99 471 aa14.3□□□□□ -0.12
NEDD9-201ENST00000379433 RRP7AQ9Y3A4 280 aaKnown RBP14.3□□□□□ -0.12
NEDD9-201ENST00000379433 NEO1Q92859 1461 aa14.29□□□□□ -0.12
NEDD9-201ENST00000379433 RBM10P98175 930 aaKnown RBP14.29□□□□□ -0.12
NEDD9-201ENST00000379433 PARD3Q8TEW0 1356 aa14.28□□□□□ -0.12
NEDD9-201ENST00000379433 MADDQ8WXG6 1647 aa14.28□□□□□ -0.12
NEDD9-201ENST00000379433 RNF17Q9BXT8 1623 aaKnown RBP14.28□□□□□ -0.12
NEDD9-201ENST00000379433 FBLN1P23142 703 aa14.28□□□□□ -0.12
NEDD9-201ENST00000379433 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.27□□□□□ -0.12
NEDD9-201ENST00000379433 EIF2AK4Q9P2K8 1649 aaKnown RBP14.27□□□□□ -0.13
NEDD9-201ENST00000379433 ABCC3O15438 1527 aa14.27□□□□□ -0.13
NEDD9-201ENST00000379433 GGNBP2Q9H3C7 697 aa14.26□□□□□ -0.13
NEDD9-201ENST00000379433 SLC52A1Q9NWF4 448 aa14.26□□□□□ -0.13
NEDD9-201ENST00000379433 APAF1O14727 1248 aa14.26□□□□□ -0.13
NEDD9-201ENST00000379433 STAC3Q96MF2 364 aa14.26□□□□□ -0.13
NEDD9-201ENST00000379433 DEPDC5O75140 1603 aa14.26□□□□□ -0.13
NEDD9-201ENST00000379433 POLR1AO95602 1720 aaPredicted RBP14.25□□□□□ -0.13
NEDD9-201ENST00000379433 NAP1L5Q96NT1 182 aaPredicted RBP14.25□□□□□ -0.13
NEDD9-201ENST00000379433 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
NEDD9-201ENST00000379433 TXNDC2Q86VQ3 553 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms