RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 TCOF1Q13428 1488 aaKnown RBP18.46■□□□□ 0.55
TCOF1-201ENST00000323668 DDX11L8A8MPP1 907 aa18.46■□□□□ 0.54
TCOF1-201ENST00000323668 MSNP26038 577 aaKnown RBP18.46■□□□□ 0.54
TCOF1-201ENST00000323668 SOX12O15370 315 aa18.45■□□□□ 0.54
TCOF1-201ENST00000323668 DNTTIP2Q5QJE6 756 aaKnown RBP18.45■□□□□ 0.54
TCOF1-201ENST00000323668 MTHFSP49914 203 aa18.45■□□□□ 0.54
TCOF1-201ENST00000323668 HDGFP51858 240 aaKnown RBP18.45■□□□□ 0.54
TCOF1-201ENST00000323668 TPRNQ4KMQ1 711 aa18.44■□□□□ 0.54
TCOF1-201ENST00000323668 FRAT2O75474 233 aaPredicted RBP18.44■□□□□ 0.54
TCOF1-201ENST00000323668 MCCP23508 829 aa18.44■□□□□ 0.54
TCOF1-201ENST00000323668 ZBTB7CA1YPR0 619 aa18.44■□□□□ 0.54
TCOF1-201ENST00000323668 MAGI1Q96QZ7 1491 aaPredicted RBP18.44■□□□□ 0.54
TCOF1-201ENST00000323668 ARHGEF11O15085 1522 aa18.43■□□□□ 0.54
TCOF1-201ENST00000323668 ANKRD45Q5TZF3 282 aa18.43■□□□□ 0.54
TCOF1-201ENST00000323668 SLFN5Q08AF3 891 aa18.43■□□□□ 0.54
TCOF1-201ENST00000323668 CHMP5Q9NZZ3 219 aa18.43■□□□□ 0.54
TCOF1-201ENST00000323668 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.43■□□□□ 0.54
TCOF1-201ENST00000323668 C20orf194Q5TEA3 1177 aa18.43■□□□□ 0.54
TCOF1-201ENST00000323668 RTF1Q92541 710 aaKnown RBP18.43■□□□□ 0.54
TCOF1-201ENST00000323668 FOXD4L1Q9NU39 408 aa18.43■□□□□ 0.54
TCOF1-201ENST00000323668 LMOD3Q0VAK6 560 aa18.42■□□□□ 0.54
TCOF1-201ENST00000323668 MLECQ14165 292 aa18.42■□□□□ 0.54
TCOF1-201ENST00000323668 ELL2O00472 640 aaPredicted RBP18.42■□□□□ 0.54
TCOF1-201ENST00000323668 PLEKHH2Q8IVE3 1493 aa18.42■□□□□ 0.54
TCOF1-201ENST00000323668 IL27Q8NEV9 243 aa18.41■□□□□ 0.54
TCOF1-201ENST00000323668 RIPK4P57078 832 aa18.41■□□□□ 0.54
TCOF1-201ENST00000323668 SKAP1Q86WV1 359 aa18.4■□□□□ 0.54
TCOF1-201ENST00000323668 CCDC141Q6ZP82 1450 aa18.4■□□□□ 0.54
TCOF1-201ENST00000323668 C22orf23Q9BZE7 217 aa18.4■□□□□ 0.54
TCOF1-201ENST00000323668 RSPH6AQ9H0K4 717 aa18.4■□□□□ 0.54
TCOF1-201ENST00000323668 DIAPH1O60610 1272 aaKnown RBP18.4■□□□□ 0.54
TCOF1-201ENST00000323668 TMEM132EQ6IEE7 984 aa18.4■□□□□ 0.54
TCOF1-201ENST00000323668 GPATCH8Q9UKJ3 1502 aaKnown RBP18.4■□□□□ 0.54
TCOF1-201ENST00000323668 MINK1Q8N4C8 1332 aaPredicted RBP18.38■□□□□ 0.53
TCOF1-201ENST00000323668 GRIN2AQ12879 1464 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 PLEKHG5O94827 1062 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 BRPF3Q9ULD4 1205 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 CTTNBP2Q8WZ74 1663 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 PDZRN3Q9UPQ7 1066 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 SCAPERQ9BY12 1400 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 SLC12A5Q9H2X9 1139 aa18.38■□□□□ 0.53
TCOF1-201ENST00000323668 PLCB2Q00722 1185 aa18.37■□□□□ 0.53
TCOF1-201ENST00000323668 OS9Q13438 667 aaPredicted RBP18.37■□□□□ 0.53
TCOF1-201ENST00000323668 HMMRO75330 724 aa18.37■□□□□ 0.53
TCOF1-201ENST00000323668 KIF16BQ96L93 1317 aa18.37■□□□□ 0.53
TCOF1-201ENST00000323668 DHX29Q7Z478 1369 aaKnown RBP18.36■□□□□ 0.53
TCOF1-201ENST00000323668 RALGAPBQ86X10 1494 aa18.35■□□□□ 0.53
TCOF1-201ENST00000323668 DUSP27Q5VZP5 1158 aa18.35■□□□□ 0.53
TCOF1-201ENST00000323668 LNPKQ9C0E8 428 aa18.35■□□□□ 0.53
TCOF1-201ENST00000323668 GGNBP2Q9H3C7 697 aa18.35■□□□□ 0.53
TCOF1-201ENST00000323668 SKOR2Q2VWA4 1001 aaPredicted RBP18.35■□□□□ 0.53
TCOF1-201ENST00000323668 NINLQ9Y2I6 1382 aa18.35■□□□□ 0.53
TCOF1-201ENST00000323668 WDR63Q8IWG1 891 aa18.33■□□□□ 0.53
TCOF1-201ENST00000323668 WWC1Q8IX03 1113 aa18.33■□□□□ 0.52
TCOF1-201ENST00000323668 CABP2Q9NPB3 220 aa18.33■□□□□ 0.52
TCOF1-201ENST00000323668 ST18O60284 1047 aa18.32■□□□□ 0.52
TCOF1-201ENST00000323668 KCNJ4P48050 445 aa18.32■□□□□ 0.52
TCOF1-201ENST00000323668 NUP153P49790 1475 aaKnown RBP18.32■□□□□ 0.52
TCOF1-201ENST00000323668 STK31Q9BXU1 1019 aa18.32■□□□□ 0.52
TCOF1-201ENST00000323668 DDX49Q9Y6V7 483 aaKnown RBP18.32■□□□□ 0.52
TCOF1-201ENST00000323668 ZNF608Q9ULD9 1512 aaPredicted RBP18.31■□□□□ 0.52
TCOF1-201ENST00000323668 SLC4A10Q6U841 1118 aa18.31■□□□□ 0.52
TCOF1-201ENST00000323668 DISP3Q9P2K9 1392 aa18.31■□□□□ 0.52
TCOF1-201ENST00000323668 EXOSC9Q06265 439 aaKnown RBP18.3■□□□□ 0.52
TCOF1-201ENST00000323668 PARD3Q8TEW0 1356 aa18.29■□□□□ 0.52
TCOF1-201ENST00000323668 API5Q9BZZ5 524 aaKnown RBP18.29■□□□□ 0.52
TCOF1-201ENST00000323668 KIF14Q15058 1648 aa18.29■□□□□ 0.52
TCOF1-201ENST00000323668 KIAA1211Q6ZU35 1233 aa18.28■□□□□ 0.52
TCOF1-201ENST00000323668 COG3Q96JB2 828 aa18.27■□□□□ 0.52
TCOF1-201ENST00000323668 TSR2Q969E8 191 aaKnown RBP18.27■□□□□ 0.51
TCOF1-201ENST00000323668 SYAP1Q96A49 352 aaPredicted RBP18.26■□□□□ 0.51
TCOF1-201ENST00000323668 TRIM6-TRIM34B2RNG4 842 aa18.26■□□□□ 0.51
TCOF1-201ENST00000323668 TEX14Q8IWB6 1497 aa18.26■□□□□ 0.51
TCOF1-201ENST00000323668 RNF123Q5XPI4 1314 aa18.26■□□□□ 0.51
TCOF1-201ENST00000323668 CT47B1P0C2W7 299 aaPredicted RBP18.26■□□□□ 0.51
TCOF1-201ENST00000323668 GNAI1P63096 354 aa18.26■□□□□ 0.51
TCOF1-201ENST00000323668 MVPQ14764 893 aaKnown RBP18.26■□□□□ 0.51
TCOF1-201ENST00000323668 GOLGA6L4A6NEF3 574 aa18.25■□□□□ 0.51
TCOF1-201ENST00000323668 NKTRP30414 1462 aaKnown RBP18.25■□□□□ 0.51
TCOF1-201ENST00000323668 TRAK2O60296 914 aa18.24■□□□□ 0.51
TCOF1-201ENST00000323668 WDR62O43379 1518 aa18.24■□□□□ 0.51
TCOF1-201ENST00000323668 PZPP20742 1482 aa18.24■□□□□ 0.51
TCOF1-201ENST00000323668 RAPGEF6Q8TEU7 1601 aa18.24■□□□□ 0.51
TCOF1-201ENST00000323668 LRPPRCP42704 1394 aaKnown RBP18.24■□□□□ 0.51
TCOF1-201ENST00000323668 MRE11P49959 708 aa18.23■□□□□ 0.51
TCOF1-201ENST00000323668 PER1O15534 1290 aaPredicted RBP18.23■□□□□ 0.51
TCOF1-201ENST00000323668 HMOX1P09601 288 aa18.23■□□□□ 0.51
TCOF1-201ENST00000323668 RARSP54136 660 aaKnown RBP18.22■□□□□ 0.51
TCOF1-201ENST00000323668 ZRSR1Q15695 479 aaKnown RBP18.22■□□□□ 0.51
TCOF1-201ENST00000323668 ATF7IPQ6VMQ6 1270 aa18.22■□□□□ 0.51
TCOF1-201ENST00000323668 TESK2Q96S53 571 aa18.22■□□□□ 0.51
TCOF1-201ENST00000323668 PRAG1Q86YV5 1406 aa18.22■□□□□ 0.51
TCOF1-201ENST00000323668 FGD1P98174 961 aa18.21■□□□□ 0.51
TCOF1-201ENST00000323668 REC8O95072 547 aa18.21■□□□□ 0.51
TCOF1-201ENST00000323668 LMOD2Q6P5Q4 547 aa18.21■□□□□ 0.51
TCOF1-201ENST00000323668 NOB1Q9ULX3 412 aaKnown RBP18.21■□□□□ 0.51
TCOF1-201ENST00000323668 SPATA31E1Q6ZUB1 1445 aa18.21■□□□□ 0.51
TCOF1-201ENST00000323668 AMER1Q5JTC6 1135 aaPredicted RBP18.2■□□□□ 0.5
TCOF1-201ENST00000323668 NOL8Q76FK4 1167 aaKnown RBP18.2■□□□□ 0.5
TCOF1-201ENST00000323668 KIAA2012Q0VF49 1180 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms