RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 CCDC184Q52MB2 194 aa11.47□□□□□ -0.57
CNOT4-201ENST00000315544 BLMP54132 1417 aaPredicted RBP11.46□□□□□ -0.57
CNOT4-201ENST00000315544 TTBK1Q5TCY1 1321 aaPredicted RBP11.45□□□□□ -0.58
CNOT4-201ENST00000315544 NHSL1Q5SYE7 1610 aa11.45□□□□□ -0.58
CNOT4-201ENST00000315544 EFCAB2Q5VUJ9 269 aa11.44□□□□□ -0.58
CNOT4-201ENST00000315544 TUBGCP6Q96RT7 1819 aa11.43□□□□□ -0.58
CNOT4-201ENST00000315544 MYOM2P54296 1465 aa11.42□□□□□ -0.58
CNOT4-201ENST00000315544 CPS1P31327 1500 aa11.42□□□□□ -0.58
CNOT4-201ENST00000315544 COL22A1Q8NFW1 1626 aaPredicted RBP11.42□□□□□ -0.58
CNOT4-201ENST00000315544 NALCNQ8IZF0 1738 aa11.42□□□□□ -0.58
CNOT4-201ENST00000315544 MARF1Q9Y4F3 1742 aaKnown RBP11.42□□□□□ -0.58
CNOT4-201ENST00000315544 MPHOSPH9Q99550 1183 aa11.42□□□□□ -0.58
CNOT4-201ENST00000315544 CDK11AQ9UQ88 783 aaPredicted RBP11.41□□□□□ -0.58
CNOT4-201ENST00000315544 ABCA3Q99758 1704 aa11.41□□□□□ -0.58
CNOT4-201ENST00000315544 PARD3Q8TEW0 1356 aa11.41□□□□□ -0.58
CNOT4-201ENST00000315544 ASXL1Q8IXJ9 1541 aa11.4□□□□□ -0.58
CNOT4-201ENST00000315544 ANKRD50Q9ULJ7 1429 aa11.39□□□□□ -0.59
CNOT4-201ENST00000315544 ARID4BQ4LE39 1312 aaPredicted RBP11.38□□□□□ -0.59
CNOT4-201ENST00000315544 SMG6Q86US8 1419 aaKnown RBP11.38□□□□□ -0.59
CNOT4-201ENST00000315544 KIF7Q2M1P5 1343 aa11.38□□□□□ -0.59
CNOT4-201ENST00000315544 QRICH2Q9H0J4 1663 aa11.38□□□□□ -0.59
CNOT4-201ENST00000315544 PER1O15534 1290 aaPredicted RBP11.37□□□□□ -0.59
CNOT4-201ENST00000315544 N4BP2Q86UW6 1770 aaPredicted RBP11.35□□□□□ -0.59
CNOT4-201ENST00000315544 FMN2Q9NZ56 1722 aa11.35□□□□□ -0.59
CNOT4-201ENST00000315544 L3MBTL2Q969R5 705 aa11.35□□□□□ -0.59
CNOT4-201ENST00000315544 P3H3Q8IVL6 736 aa11.34□□□□□ -0.59
CNOT4-201ENST00000315544 RAPGEF3O95398 923 aa11.33□□□□□ -0.6
CNOT4-201ENST00000315544 NRKQ7Z2Y5 1582 aa11.33□□□□□ -0.6
CNOT4-201ENST00000315544 CDC42BPGQ6DT37 1551 aa11.32□□□□□ -0.6
CNOT4-201ENST00000315544 CENPBP07199 599 aaPredicted RBP11.32□□□□□ -0.6
CNOT4-201ENST00000315544 TRPM3Q9HCF6 1732 aaPredicted RBP11.32□□□□□ -0.6
CNOT4-201ENST00000315544 NKTRP30414 1462 aaKnown RBP11.32□□□□□ -0.6
CNOT4-201ENST00000315544 HSPA5P11021 654 aaKnown RBP11.32□□□□□ -0.6
CNOT4-201ENST00000315544 DLC1Q96QB1 1528 aa11.32□□□□□ -0.6
CNOT4-201ENST00000315544 MSH5O43196 834 aa11.31□□□□□ -0.6
CNOT4-201ENST00000315544 TESK2Q96S53 571 aa11.31□□□□□ -0.6
CNOT4-201ENST00000315544 PRKRIP1Q9H875 184 aaPredicted RBP11.3□□□□□ -0.6
CNOT4-201ENST00000315544 AHDC1Q5TGY3 1603 aaPredicted RBP11.3□□□□□ -0.6
CNOT4-201ENST00000315544 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.29□□□□□ -0.6
CNOT4-201ENST00000315544 ZMYM3Q14202 1370 aa11.29□□□□□ -0.6
CNOT4-201ENST00000315544 WNK3Q9BYP7 1800 aa11.29□□□□□ -0.6
CNOT4-201ENST00000315544 NCOA3Q9Y6Q9 1424 aa11.29□□□□□ -0.6
CNOT4-201ENST00000315544 KIF15Q9NS87 1388 aa11.28□□□□□ -0.6
CNOT4-201ENST00000315544 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.28□□□□□ -0.6
CNOT4-201ENST00000315544 TECPR2O15040 1411 aa11.28□□□□□ -0.6
CNOT4-201ENST00000315544 ZNF521Q96K83 1311 aa11.28□□□□□ -0.6
CNOT4-201ENST00000315544 AKAP12Q02952 1782 aa11.27□□□□□ -0.6
CNOT4-201ENST00000315544 RGPD1P0DJD0 1748 aa11.27□□□□□ -0.6
CNOT4-201ENST00000315544 CCDC144AA2RUR9 1427 aa11.27□□□□□ -0.61
CNOT4-201ENST00000315544 ZBED9Q6R2W3 1325 aa11.26□□□□□ -0.61
CNOT4-201ENST00000315544 AFAP1Q8N556 730 aa11.26□□□□□ -0.61
CNOT4-201ENST00000315544 KTN1Q86UP2 1357 aaKnown RBP11.26□□□□□ -0.61
CNOT4-201ENST00000315544 MST1RQ04912 1400 aa11.25□□□□□ -0.61
CNOT4-201ENST00000315544 PHRF1Q9P1Y6 1649 aaKnown RBP11.25□□□□□ -0.61
CNOT4-201ENST00000315544 KIF20BQ96Q89 1820 aa11.25□□□□□ -0.61
CNOT4-201ENST00000315544 COL3A1P02461 1466 aaPredicted RBP11.25□□□□□ -0.61
CNOT4-201ENST00000315544 COL16A1Q07092 1604 aaPredicted RBP11.25□□□□□ -0.61
CNOT4-201ENST00000315544 ALS2Q96Q42 1657 aa11.24□□□□□ -0.61
CNOT4-201ENST00000315544 TRHP20396 242 aaPredicted RBP11.24□□□□□ -0.61
CNOT4-201ENST00000315544 ANKRD30AQ9BXX3 1397 aa11.24□□□□□ -0.61
CNOT4-201ENST00000315544 MON2Q7Z3U7 1717 aa11.24□□□□□ -0.61
CNOT4-201ENST00000315544 ITSN1Q15811 1721 aa11.23□□□□□ -0.61
CNOT4-201ENST00000315544 USP47Q96K76 1375 aa11.23□□□□□ -0.61
CNOT4-201ENST00000315544 NPC1L1Q9UHC9 1359 aa11.23□□□□□ -0.61
CNOT4-201ENST00000315544 KIF1AQ12756 1690 aa11.23□□□□□ -0.61
CNOT4-201ENST00000315544 ADAMTS13Q76LX8 1427 aa11.23□□□□□ -0.61
CNOT4-201ENST00000315544 SPAG9O60271 1321 aaKnown RBP11.23□□□□□ -0.61
CNOT4-201ENST00000315544 TULP4Q9NRJ4 1543 aa11.22□□□□□ -0.61
CNOT4-201ENST00000315544 LRRC7Q96NW7 1537 aa11.22□□□□□ -0.61
CNOT4-201ENST00000315544 DISP3Q9P2K9 1392 aa11.22□□□□□ -0.61
CNOT4-201ENST00000315544 CD163L1Q9NR16 1453 aa11.21□□□□□ -0.61
CNOT4-201ENST00000315544 MED1Q15648 1581 aaPredicted RBP11.21□□□□□ -0.61
CNOT4-201ENST00000315544 TONSLQ96HA7 1378 aa11.21□□□□□ -0.62
CNOT4-201ENST00000315544 SCAF11Q99590 1463 aaKnown RBP11.21□□□□□ -0.62
CNOT4-201ENST00000315544 APLP2Q06481 763 aa11.2□□□□□ -0.62
CNOT4-201ENST00000315544 PIK3C2GO75747 1445 aa11.2□□□□□ -0.62
CNOT4-201ENST00000315544 DDX10Q13206 875 aaKnown RBP11.2□□□□□ -0.62
CNOT4-201ENST00000315544 PNISRQ8TF01 805 aaKnown RBP11.2□□□□□ -0.62
CNOT4-201ENST00000315544 SBNO2Q9Y2G9 1366 aa11.2□□□□□ -0.62
CNOT4-201ENST00000315544 CFDP1Q9UEE9 299 aaPredicted RBP11.19□□□□□ -0.62
CNOT4-201ENST00000315544 PTCH1Q13635 1447 aa11.19□□□□□ -0.62
CNOT4-201ENST00000315544 FOXD1Q16676 465 aa11.19□□□□□ -0.62
CNOT4-201ENST00000315544 DLG5Q8TDM6 1919 aa11.18□□□□□ -0.62
CNOT4-201ENST00000315544 ERICH6BQ5W0A0 696 aa11.18□□□□□ -0.62
CNOT4-201ENST00000315544 NRAPQ86VF7 1730 aa11.18□□□□□ -0.62
CNOT4-201ENST00000315544 RANGAP1P46060 587 aaPredicted RBP11.18□□□□□ -0.62
CNOT4-201ENST00000315544 HNRNPMP52272 730 aaKnown RBP eCLIP11.17□□□□□ -0.62
CNOT4-201ENST00000315544 FAM50AQ14320 339 aaKnown RBP11.17□□□□□ -0.62
CNOT4-201ENST00000315544 TRMT2AQ8IZ69 625 aaKnown RBP11.17□□□□□ -0.62
CNOT4-201ENST00000315544 PIK3R4Q99570 1358 aa11.17□□□□□ -0.62
CNOT4-201ENST00000315544 PLEKHG1Q9ULL1 1385 aa11.17□□□□□ -0.62
CNOT4-201ENST00000315544 RRP7BPQ9NSQ0 103 aa11.16□□□□□ -0.62
CNOT4-201ENST00000315544 TNRQ92752 1358 aa11.16□□□□□ -0.62
CNOT4-201ENST00000315544 FANCIQ9NVI1 1328 aa11.16□□□□□ -0.62
CNOT4-201ENST00000315544 DCCP43146 1447 aa11.16□□□□□ -0.62
CNOT4-201ENST00000315544 CFAP65Q6ZU64 1925 aaKnown RBP11.14□□□□□ -0.63
CNOT4-201ENST00000315544 BRD4O60885 1362 aaPredicted RBP11.14□□□□□ -0.63
CNOT4-201ENST00000315544 PLCH1Q4KWH8 1693 aa11.14□□□□□ -0.63
CNOT4-201ENST00000315544 CAMTA1Q9Y6Y1 1673 aa11.14□□□□□ -0.63
CNOT4-201ENST00000315544 ROBO1Q9Y6N7 1651 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms