RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 UPP1Q16831 310 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 KLHL10Q6JEL2 608 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 FUT10Q6P4F1 479 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 DCLRE1AQ6PJP8 1040 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 NT5DC4Q86YG4 428 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 ADSSL1Q8N142 457 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 FBXL18Q96ME1 805 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 FNBP1Q96RU3 617 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 PDE11AQ9HCR9 933 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 CLEC1BQ9P126 229 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 FRMD4BQ9Y2L6 1034 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 PER2O15055 1255 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 GUCY2FP51841 1108 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 CYP24A1Q07973 514 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 SMC1AQ14683 1233 aaKnown RBP19.57■□□□□ 0.72
CLN3-239ENST00000628023 SLC9A9Q8IVB4 645 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 CACTINQ8WUQ7 758 aaKnown RBP19.57■□□□□ 0.72
CLN3-239ENST00000628023 CCDC127Q96BQ5 260 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 NGRNQ9NPE2 291 aaKnown RBP19.57■□□□□ 0.72
CLN3-239ENST00000628023 BARX2Q9UMQ3 279 aaPredicted RBP19.57■□□□□ 0.72
CLN3-239ENST00000628023 CTNND2Q9UQB3 1225 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 NUB1Q9Y5A7 615 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 PCDHGC5Q9Y5F6 944 aa19.57■□□□□ 0.72
CLN3-239ENST00000628023 ANK1P16157 1881 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 URODP06132 367 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 TMEM191BP0C7N4 346 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 DLATP10515 647 aaKnown RBP19.56■□□□□ 0.72
CLN3-239ENST00000628023 WNT7BP56706 349 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 ERVFC1P60507 584 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 ELAVL2Q12926 359 aaKnown RBP19.56■□□□□ 0.72
CLN3-239ENST00000628023 MYBPC2Q14324 1141 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 ZBTB6Q15916 424 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 DUSP6Q16828 381 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 EDRF1Q3B7T1 1238 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 SPATA1Q5VX52 437 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 KIAA1841Q6NSI8 718 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 RNF135Q8IUD6 432 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 EFCAB13Q8IY85 973 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 DHTKD1Q96HY7 919 aaPredicted RBP19.56■□□□□ 0.72
CLN3-239ENST00000628023 ANKRD36BP1Q96IX9 119 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 HERC2P3Q9BVR0 1158 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 VN1R3Q9BXE9 311 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 ZBP1Q9H171 429 aa19.56■□□□□ 0.72
CLN3-239ENST00000628023 USP15Q9Y4E8 981 aaPredicted RBP19.56■□□□□ 0.72
CLN3-239ENST00000628023 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.55■□□□□ 0.72
CLN3-239ENST00000628023 TMEM189-UBE2V1I3L0A0 370 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 FSCN2O14926 492 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 TRAPPC3O43617 180 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 GLP2RO95838 553 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 SOD2P04179 222 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 TNNI1P19237 187 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 PTMSP20962 102 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 BMP6P22004 513 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 LRPAP1P30533 357 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 LRRC63Q05C16 580 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 ADAM9Q13443 819 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 NFIL3Q16649 462 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 ZCWPW2Q504Y3 356 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 LMBRD2Q68DH5 695 aaPredicted RBP19.55■□□□□ 0.72
CLN3-239ENST00000628023 TMEM130Q8N3G9 435 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 NELFBQ8WX92 580 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 GPR62Q9BZJ7 368 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 DMAC2Q9NW81 257 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 DPP3Q9NY33 737 aa19.55■□□□□ 0.72
CLN3-239ENST00000628023 R3HCC1Q9Y3T6 440 aaKnown RBP19.55■□□□□ 0.72
CLN3-239ENST00000628023 BICDL2A1A5D9 508 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 TRIM49BA6NDI0 452 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 C2CD2LO14523 706 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CETN3O15182 167 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 TNNC2P02585 160 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CTSAP10619 480 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CD44P16070 742 aaKnown RBP19.54■□□□□ 0.72
CLN3-239ENST00000628023 CCNE1P24864 410 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 GLUD2P49448 558 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 PAK1Q13153 545 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 PSMD6Q15008 389 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 USP41Q3LFD5 358 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CCDC183Q5T5S1 534 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 FAM171A1Q5VUB5 890 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CENPPQ6IPU0 288 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CEP57Q86XR8 500 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 WDR49Q8IV35 697 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 C3orf58Q8NDZ4 430 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 TMEM174Q8WUU8 243 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 AUTS2Q8WXX7 1259 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 CGRRF1Q99675 332 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 PHF7Q9BWX1 381 aaPredicted RBP19.54■□□□□ 0.72
CLN3-239ENST00000628023 MTMR12Q9C0I1 747 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 MRPL17Q9NRX2 175 aaKnown RBP19.54■□□□□ 0.72
CLN3-239ENST00000628023 MUTYHQ9UIF7 546 aa19.54■□□□□ 0.72
CLN3-239ENST00000628023 PPP1R3GB7ZBB8 358 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 CXCL14O95715 111 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 EPB41P11171 864 aaKnown RBP19.53■□□□□ 0.72
CLN3-239ENST00000628023 KRT13P13646 458 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 CASP4P49662 377 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 PMS1P54277 932 aaKnown RBP19.53■□□□□ 0.72
CLN3-239ENST00000628023 C9orf57Q5W0N0 161 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 ANKRD40Q6AI12 368 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 TAS1R1Q7RTX1 841 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 USP37Q86T82 979 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms