RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ITGB3P05106 788 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 KRT19P08727 400 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 CCDC192P0DO97 292 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 PAX3P23760 479 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 PDE12Q6L8Q7 609 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 TMC7Q7Z402 723 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 C1orf127Q8N9H9 656 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 PLEKHO2Q8TD55 490 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 MICAL1Q8TDZ2 1067 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 MYLIPQ8WY64 445 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 ZNF560Q96MR9 790 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 GUCD1Q96NT3 240 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 HERC2P3Q9BVR0 1158 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 ANO9A1A5B4 782 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 PIRO00625 290 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 IKBKBO14920 756 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 STX10O60499 249 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 PHACTR2O75167 634 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 SOD2P04179 222 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 DNAJB1P25685 340 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 POLR2BP30876 1174 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 PNPLA4P41247 253 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 CLDN10P78369 228 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 RBP5P82980 135 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 BIRC3Q13489 604 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 TCERG1LQ5VWI1 586 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 KIAA1841Q6NSI8 718 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 TRAPPC11Q7Z392 1133 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 FRMD5Q7Z6J6 570 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 TMEM130Q8N3G9 435 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 C3orf58Q8NDZ4 430 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 FAM84AQ96KN4 292 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 TCF25Q9BQ70 676 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 NAT10Q9H0A0 1025 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 GZF1Q9H116 711 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 NGRNQ9NPE2 291 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 AGAP1Q9UPQ3 857 aa20.62■□□□□ 0.89
SQSTM1-216ENST00000626660 SYCE3A1L190 88 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 URODP06132 367 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 FOSL2P15408 326 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 CA8P35219 290 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 BRCC3P46736 316 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 TAF6P49848 677 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 DLG4P78352 724 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 ADGRE1Q14246 886 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 SMC1AQ14683 1233 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 USP41Q3LFD5 358 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 TIGD5Q53EQ6 642 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 FAM171A1Q5VUB5 890 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 LRRC52Q8N7C0 313 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 PPP2R3CQ969Q6 453 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 BORCS6Q96GS4 357 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 VN1R3Q9BXE9 311 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 GPR62Q9BZJ7 368 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 ZBP1Q9H171 429 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 SSX2IPQ9Y2D8 614 aa20.61■□□□□ 0.89
SQSTM1-216ENST00000626660 ARHGEF37A1IGU5 675 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 PPEF2O14830 753 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 TRIM49P0CI25 452 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 TRIM49CP0CI26 452 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 POU3F3P20264 500 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 GTF2H1P32780 548 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 GLUD2P49448 558 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 ERVFC1P60507 584 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 MYO1EQ12965 1108 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 TRPC3Q13507 836 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 CAMK1Q14012 370 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 SV2CQ496J9 727 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 DCAF17Q5H9S7 520 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 PLPP4Q5VZY2 271 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 CD300LGQ6UXG3 332 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 DSTYKQ6XUX3 929 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 C11orf57Q6ZUT1 292 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 FAM114A1Q8IWE2 563 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 ZNF516Q92618 1163 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 SUSD3Q96L08 255 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 MED15Q96RN5 788 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 TTPALQ9BTX7 342 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 DNAJC25Q9H1X3 360 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 MTCH2Q9Y6C9 303 aa20.6■□□□□ 0.89
SQSTM1-216ENST00000626660 ATG2AQ2TAZ0 1938 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 FSCN2O14926 492 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 CXCL14O95715 111 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 EFEMP2O95967 443 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 CTSAP10619 480 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 LILRA4P59901 499 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 ZSCAN23Q3MJ62 389 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 TAS1R1Q7RTX1 841 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 CEP57Q86XR8 500 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 RNF168Q8IYW5 571 aaPredicted RBP20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 ENOX1Q8TC92 643 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 THAP9Q9H5L6 903 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 MMRN2Q9H8L6 949 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 MRPL17Q9NRX2 175 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 SIX4Q9UIU6 781 aa20.59■□□□□ 0.89
SQSTM1-216ENST00000626660 TRANK1O15050 2925 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 I3L4J1 428 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 SYN3O14994 580 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms