RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CAVIN3Q969G5 261 aa15.47■□□□□ 0.07
VRK3-217ENST00000599538 CPB2Q96IY4 423 aa15.47■□□□□ 0.07
VRK3-217ENST00000599538 RPS6KC1Q96S38 1066 aa15.47■□□□□ 0.07
VRK3-217ENST00000599538 UVRAGQ9P2Y5 699 aa15.47■□□□□ 0.07
VRK3-217ENST00000599538 UNCXA6NJT0 531 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 BHMG1C9JSJ3 638 aaPredicted RBP15.46■□□□□ 0.07
VRK3-217ENST00000599538 WEE2P0C1S8 567 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 NOMO3P69849 1222 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 IRX5P78411 483 aaPredicted RBP15.46■□□□□ 0.07
VRK3-217ENST00000599538 CENPCQ03188 943 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 GPS2Q13227 327 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 DUOXA2Q1HG44 320 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 ZNF484Q5JVG2 852 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 SCARA5Q6ZMJ2 495 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 MON1BQ7L1V2 547 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 C11orf70Q9BRQ4 267 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 ANAPC7Q9UJX3 599 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 ADAM21Q9UKJ8 722 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 AKT3Q9Y243 479 aa15.46■□□□□ 0.07
VRK3-217ENST00000599538 MIF4GDA9UHW6 222 aaKnown RBP15.46■□□□□ 0.06
VRK3-217ENST00000599538 H3BRB1 525 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 THAP12O43422 761 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 SPOPO43791 374 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 GJB6O95452 261 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 TBXAS1P24557 533 aaPredicted RBP15.46■□□□□ 0.06
VRK3-217ENST00000599538 BPIFB4P59827 614 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 PAK2Q13177 524 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 GRM1Q13255 1194 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 PRAMEF19Q5SWL8 479 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 MARCH8Q5T0T0 291 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 CST9Q5W186 159 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 ZNF467Q7Z7K2 595 aaPredicted RBP15.46■□□□□ 0.06
VRK3-217ENST00000599538 ZNF677Q86XU0 584 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 TRIM51Q9BSJ1 452 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 XYLT2Q9H1B5 865 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 TUT1Q9H6E5 874 aaKnown RBP15.46■□□□□ 0.06
VRK3-217ENST00000599538 ZHX1Q9UKY1 873 aaPredicted RBP15.46■□□□□ 0.06
VRK3-217ENST00000599538 TNFSF13BQ9Y275 285 aa15.46■□□□□ 0.06
VRK3-217ENST00000599538 NSFP46459 744 aaKnown RBP15.45■□□□□ 0.06
VRK3-217ENST00000599538 ZNF132P52740 706 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 MTHFD1LQ6UB35 978 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 UBL4BQ8N7F7 174 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 C2orf69Q8N8R5 385 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 UBE2Q2Q8WVN8 375 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 ZNF606Q8WXB4 792 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 EMID1Q96A84 441 aaPredicted RBP15.45■□□□□ 0.06
VRK3-217ENST00000599538 IMPG2Q9BZV3 1241 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 CPA4Q9UI42 421 aa15.45■□□□□ 0.06
VRK3-217ENST00000599538 GOLGA6BA6NDN3 693 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 O00370 1275 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 ASAP2O43150 1006 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 DAPK3O43293 454 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 RNF40O75150 1001 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PPFIA4O75335 1185 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 NFICP08651 508 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 TMEM191BP0C7N4 346 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 MAPK4P31152 587 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 CTNNA1P35221 906 aaKnown RBP15.44■□□□□ 0.06
VRK3-217ENST00000599538 PTP4A2Q12974 167 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 ACVR2BQ13705 512 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 FAM110CQ1W6H9 321 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PLEKHH3Q7Z736 793 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 FAM71BQ8TC56 605 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 TINF2Q9BSI4 451 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 WNT8AQ9H1J5 351 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 SLITRK6Q9H5Y7 841 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 CISHQ9NSE2 258 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 SIX4Q9UIU6 781 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 POLIQ9UNA4 740 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PCDHA3Q9Y5H8 950 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 DNAH12Q6ZR08 3092 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 B4GALT4O60513 344 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 MMP3P08254 477 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 ARF4P18085 180 aaPredicted RBP15.44■□□□□ 0.06
VRK3-217ENST00000599538 FGFR4P22455 802 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 BRD2P25440 801 aaKnown RBP15.44■□□□□ 0.06
VRK3-217ENST00000599538 FLT3P36888 993 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 AP3M2P53677 418 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 FKBP1BP68106 108 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 HLTFQ14527 1009 aaKnown RBP eCLIP15.44■□□□□ 0.06
VRK3-217ENST00000599538 DUSP28Q4G0W2 176 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 HSP90B2PQ58FF3 399 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 MMS22LQ6ZRQ5 1243 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PRELID2Q8N945 189 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 LENG1Q96BZ8 264 aaPredicted RBP15.44■□□□□ 0.06
VRK3-217ENST00000599538 C18orf8Q96DM3 657 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PARK7Q99497 189 aaKnown RBP15.44■□□□□ 0.06
VRK3-217ENST00000599538 NFKBIZQ9BYH8 718 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 TRIM31Q9BZY9 425 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 NIF3L1Q9GZT8 377 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 ACBD3Q9H3P7 528 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PDZD7Q9H5P4 517 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 MED4Q9NPJ6 270 aa15.44■□□□□ 0.06
VRK3-217ENST00000599538 PRMT7Q9NVM4 692 aaPredicted RBP15.44■□□□□ 0.06
VRK3-217ENST00000599538 LACTBL1A8MY62 500 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 STAG3L1P0CL83 205 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 ASPAP45381 313 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 PHKA2P46019 1235 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 RAP1GAPP47736 663 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 TRPC3Q13507 836 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms