RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ENOSF1Q7L5Y1 443 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 CACNA2D4Q7Z3S7 1137 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 CNGA4Q8IV77 575 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 ZNF397Q8NF99 534 aaPredicted RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 TOP1MTQ969P6 601 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 DDX27Q96GQ7 796 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 NUCKS1Q9H1E3 243 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 MTIF3Q9H2K0 278 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 ZMYND8Q9ULU4 1186 aaPredicted RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 MYO6Q9UM54 1294 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 CAPN11Q9UMQ6 739 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 PLAGL2Q9UPG8 496 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 AGAP1Q9UPQ3 857 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 PIRO00625 290 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 POMCP01189 267 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 P4HA1P13674 534 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 TBXAS1P24557 533 aaPredicted RBP11.55□□□□□ -0.56
SS18-213ENST00000579640 GUCY2FP51841 1108 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 POLR2FP61218 127 aaKnown RBP11.55□□□□□ -0.56
SS18-213ENST00000579640 ZBED6P86452 979 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 GCNT1Q02742 428 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 SOX4Q06945 474 aaPredicted RBP11.55□□□□□ -0.56
SS18-213ENST00000579640 TMEM240Q5SV17 173 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 ZNF365Q70YC5 407 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 C16orf59Q7L2K0 433 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 FMNL3Q8IVF7 1028 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 JAKMIP2Q96AA8 810 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 HPDLQ96IR7 371 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 CASD1Q96PB1 797 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 NAA15Q9BXJ9 866 aaKnown RBP11.55□□□□□ -0.56
SS18-213ENST00000579640 XYLT2Q9H1B5 865 aa11.55□□□□□ -0.56
SS18-213ENST00000579640 LUC7L2Q9Y383 392 aaKnown RBP11.55□□□□□ -0.56
SS18-213ENST00000579640 AKR1B15C9JRZ8 316 aaPredicted RBP11.54□□□□□ -0.56
SS18-213ENST00000579640 EPHB6O15197 1021 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 CLSTN1O94985 981 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 CASP14P31944 242 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 RGS19P49795 217 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 AFF1P51825 1210 aaKnown RBP11.54□□□□□ -0.56
SS18-213ENST00000579640 MFAP3P55082 362 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 RNASELQ05823 741 aaKnown RBP11.54□□□□□ -0.56
SS18-213ENST00000579640 DSC1Q08554 894 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 LRMPQ12912 555 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 ZNF667Q5HYK9 610 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 IQCEQ6IPM2 695 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 PHLDB3Q6NSJ2 640 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 OTOP2Q7RTS6 562 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 LRRC43Q8N309 656 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 PPM1KQ8N3J5 372 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 HERVK_113Q902F9 699 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 FAM193BQ96PV7 902 aaPredicted RBP11.54□□□□□ -0.56
SS18-213ENST00000579640 PI4K2AQ9BTU6 479 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 STK33Q9BYT3 514 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 NIF3L1Q9GZT8 377 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 FAM124BQ9H5Z6 455 aaPredicted RBP11.54□□□□□ -0.56
SS18-213ENST00000579640 UBE2TQ9NPD8 197 aaPredicted RBP11.54□□□□□ -0.56
SS18-213ENST00000579640 TBC1D13Q9NVG8 400 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 DNAJC12Q9UKB3 198 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 FHOD1Q9Y613 1164 aa11.54□□□□□ -0.56
SS18-213ENST00000579640 ZBBXA8MT70 800 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 PODXLO00592 558 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 MFAP3LO75121 409 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 LRRN2O75325 713 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 DGKIO75912 1065 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 PTMAP06454 111 aaKnown RBP11.53□□□□□ -0.56
SS18-213ENST00000579640 TAF6P49848 677 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 ARID5BQ14865 1188 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 SV2CQ496J9 727 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 ARHGEF19Q8IW93 802 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 CPLX3Q8WVH0 158 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 SPAG5Q96R06 1193 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.53□□□□□ -0.56
SS18-213ENST00000579640 APOBEC3GQ9HC16 384 aaKnown RBP11.53□□□□□ -0.56
SS18-213ENST00000579640 NUB1Q9Y5A7 615 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 FNDC1Q4ZHG4 1894 aaPredicted RBP11.53□□□□□ -0.56
SS18-213ENST00000579640 CARNS1A5YM72 827 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 TBKBP1A7MCY6 615 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 UPP2O95045 317 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 KRT9P35527 623 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 FXR1P51114 621 aaKnown RBP eCLIP11.53□□□□□ -0.56
SS18-213ENST00000579640 EPHB4P54760 987 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 YWHAEP62258 255 aaKnown RBP11.53□□□□□ -0.56
SS18-213ENST00000579640 TNNC1P63316 161 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 DEFB103AP81534 67 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 APBA1Q02410 837 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 CUL2Q13617 745 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 UPP1Q16831 310 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 TSR1Q2NL82 804 aaKnown RBP11.53□□□□□ -0.56
SS18-213ENST00000579640 WDR72Q3MJ13 1102 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 CCDC186Q7Z3E2 898 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 COLGALT2Q8IYK4 626 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 TTC39CQ8N584 583 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 PHOSPHO2Q8TCD6 241 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 BAP1Q92560 729 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 SYN2Q92777 582 aaPredicted RBP11.53□□□□□ -0.56
SS18-213ENST00000579640 TATDN2Q93075 761 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 SLC9A7Q96T83 725 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 TMEM175Q9BSA9 504 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 CYP3A43Q9HB55 503 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 GOLGA2P5Q9HBQ8 144 aa11.53□□□□□ -0.56
SS18-213ENST00000579640 NLRC4Q9NPP4 1024 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms