RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 ASTE1Q2TB18 679 aaPredicted RBP14.97□□□□□ -0.01
CLK3-209ENST00000562670 RAD9BQ6WBX8 426 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 ECHDC2Q86YB7 292 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 UBR7Q8N806 425 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 LINC01599Q8WXQ3 324 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 SEPT8Q92599 483 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 PAWRQ96IZ0 340 aaKnown RBP14.97□□□□□ -0.01
CLK3-209ENST00000562670 CHP1Q99653 195 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 WNT8AQ9H1J5 351 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 RNF39Q9H2S5 420 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 ELAC1Q9H777 363 aaKnown RBP14.97□□□□□ -0.01
CLK3-209ENST00000562670 NHEJ1Q9H9Q4 299 aaPredicted RBP14.97□□□□□ -0.01
CLK3-209ENST00000562670 PARP2Q9UGN5 583 aa14.97□□□□□ -0.01
CLK3-209ENST00000562670 EIF3CLB5ME19 914 aaKnown RBP14.96□□□□□ -0.01
CLK3-209ENST00000562670 RBAK-RBAKDNI3L0D1 243 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 ZNF500O60304 480 aaPredicted RBP14.96□□□□□ -0.01
CLK3-209ENST00000562670 NDUFA10O95299 355 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 P4HA1P13674 534 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 PNPLA4P41247 253 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 YWHAEP62258 255 aaKnown RBP14.96□□□□□ -0.01
CLK3-209ENST00000562670 KLHL30Q0D2K2 578 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 AGMOQ6ZNB7 445 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 TTC39CQ8N584 583 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 GSTCDQ8NEC7 633 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 TATDN2Q93075 761 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 ZNF560Q96MR9 790 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 RPS6KC1Q96S38 1066 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 EIF3CQ99613 913 aaKnown RBP14.96□□□□□ -0.01
CLK3-209ENST00000562670 SYT11Q9BT88 431 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 PI4K2AQ9BTU6 479 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 APOL6Q9BWW8 343 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 BCO2Q9BYV7 579 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 RSAD1Q9HA92 442 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 RNF216Q9NWF9 866 aaPredicted RBP14.96□□□□□ -0.01
CLK3-209ENST00000562670 NUB1Q9Y5A7 615 aa14.96□□□□□ -0.01
CLK3-209ENST00000562670 GOLGA6L9A6NEM1 432 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 FOXN3O00409 490 aaPredicted RBP14.95□□□□□ -0.02
CLK3-209ENST00000562670 KIAA0355O15063 1070 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 ACO1P21399 889 aaKnown RBP14.95□□□□□ -0.02
CLK3-209ENST00000562670 PAX3P23760 479 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 POLR2BP30876 1174 aaKnown RBP14.95□□□□□ -0.02
CLK3-209ENST00000562670 ASPAP45381 313 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 MYO1EQ12965 1108 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 GRIK3Q13003 919 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 ARHGAP44Q17R89 818 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 LRRC26Q2I0M4 334 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 TDRD12Q587J7 1177 aaKnown RBP14.95□□□□□ -0.02
CLK3-209ENST00000562670 ZNF667Q5HYK9 610 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 VPS36Q86VN1 386 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 KAT5Q92993 513 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 CCDC42Q96M95 316 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 CYP3A43Q9HB55 503 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 SPTLC3Q9NUV7 552 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 TMEM161AQ9NX61 479 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 TUBGCP4Q9UGJ1 667 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 ATP11BQ9Y2G3 1177 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 R3HCC1Q9Y3T6 440 aaKnown RBP14.95□□□□□ -0.02
CLK3-209ENST00000562670 ADGRG1Q9Y653 693 aa14.95□□□□□ -0.02
CLK3-209ENST00000562670 EPN1Q9Y6I3 576 aaPredicted RBP14.95□□□□□ -0.02
CLK3-209ENST00000562670 UMODL1Q5DID0 1318 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 ARL5CA6NH57 179 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 PIRO00625 290 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 ZSCAN12O43309 604 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 IPO7O95373 1038 aaKnown RBP14.94□□□□□ -0.02
CLK3-209ENST00000562670 KRT19P08727 400 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 CCDC175P0C221 793 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 MLH1P40692 756 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 KIF11P52732 1056 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 ZNF132P52740 706 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 BPIFB4P59827 614 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 BMS1Q14692 1282 aaKnown RBP14.94□□□□□ -0.02
CLK3-209ENST00000562670 NAB2Q15742 525 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 C9orf57Q5W0N0 161 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 SPOPLQ6IQ16 392 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 ZNF662Q6ZS27 426 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 RTN4RL1Q86UN2 441 aaPredicted RBP14.94□□□□□ -0.02
CLK3-209ENST00000562670 CCAR2Q8N163 923 aaKnown RBP14.94□□□□□ -0.02
CLK3-209ENST00000562670 DBF4BQ8NFT6 615 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 EPS8L1Q8TE68 723 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 HPDLQ96IR7 371 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 CXCL16Q9H2A7 254 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 TMEM39AQ9NV64 488 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 AGAP1Q9UPQ3 857 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 TRIP11Q15643 1979 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 LTBP2Q14767 1821 aa14.94□□□□□ -0.02
CLK3-209ENST00000562670 KIAA0100Q14667 2235 aaKnown RBP14.93□□□□□ -0.02
CLK3-209ENST00000562670 MEIS3P2A8K0S8 358 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 THP07101 528 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 RPL9P32969 192 aaKnown RBP14.93□□□□□ -0.02
CLK3-209ENST00000562670 EIF4A3P38919 411 aaKnown RBP14.93□□□□□ -0.02
CLK3-209ENST00000562670 KRT83P78385 493 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 PTK2Q05397 1052 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 INCA1Q0VD86 236 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 MTF1Q14872 753 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 SLC18A3Q16572 532 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 GLRA4Q5JXX5 417 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 TOGARAM2Q6ZUX3 1019 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 ZNF677Q86XU0 584 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 TXLNBQ8N3L3 684 aa14.93□□□□□ -0.02
CLK3-209ENST00000562670 OLIG1Q8TAK6 271 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms