RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KIAA1841Q6NSI8 718 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 PDXDC1Q6P996 788 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 C11orf57Q6ZUT1 292 aaPredicted RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 TRAPPC11Q7Z392 1133 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 DDX53Q86TM3 631 aaKnown RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 GDPD5Q8WTR4 605 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 EEF2KMTQ96G04 330 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 ANP32EQ9BTT0 268 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 HERC2P3Q9BVR0 1158 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 CXCL16Q9H2A7 254 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 TTYH1Q9H313 450 aaPredicted RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 TMEM8AQ9HCN3 771 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 NGRNQ9NPE2 291 aaKnown RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 ENTPD7Q9NQZ7 604 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 TLR9Q9NR96 1032 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 NFE2L3Q9Y4A8 694 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 ANK1P16157 1881 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 ANO9A1A5B4 782 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 FSD2A1L4K1 749 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 PIRO00625 290 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 SYN3O14994 580 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 TRIM49P0CI25 452 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 TRIM49CP0CI26 452 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 PIK3CAP42336 1068 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 MTIF2P46199 727 aaKnown RBP10.86□□□□□ -0.67
USP3-216ENST00000559873 ZNF165P49910 485 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 WNT7BP56706 349 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 USP41Q3LFD5 358 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 KRT39Q6A163 491 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 DSTYKQ6XUX3 929 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 TMEM173Q86WV6 379 aaPredicted RBP10.86□□□□□ -0.67
USP3-216ENST00000559873 C1orf127Q8N9H9 656 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 APPL2Q8NEU8 664 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 OR5B17Q8NGF7 314 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 HASPINQ8TF76 798 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 POF1BQ8WVV4 589 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 TAF4BQ92750 862 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 PAAF1Q9BRP4 392 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 FUCA2Q9BTY2 467 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 PRDM12Q9H4Q4 367 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 MMRN2Q9H8L6 949 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 LMCD1Q9NZU5 365 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 AGAP1Q9UPQ3 857 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP3-216ENST00000559873 TRIP11Q15643 1979 aa10.86□□□□□ -0.67
USP3-216ENST00000559873 COL4A4P53420 1690 aaPredicted RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 PTPRJQ12913 1337 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 GRM6O15303 877 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 P4HA2O15460 535 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 ODC1P11926 461 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 P4HA1P13674 534 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 ATICP31939 592 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 CA8P35219 290 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 GCLMP48507 274 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 GLUD2P49448 558 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 GUCY2FP51841 1108 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 MCCD1P59942 119 aaPredicted RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 TNNC1P63316 161 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 DLG4P78352 724 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 SMC1AQ14683 1233 aaKnown RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 GRIN2CQ14957 1233 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 ZNF699Q32M78 642 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 ZACNQ401N2 412 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 SV2AQ7L0J3 742 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 TMC7Q7Z402 723 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 SPRED2Q7Z698 418 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 CREBRFQ8IUR6 639 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 TRIM59Q8IWR1 403 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 GPR65Q8IYL9 337 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 VPS52Q8N1B4 723 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 DEFB123Q8N688 67 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 AOPEPQ8N6M6 819 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 C3orf58Q8NDZ4 430 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 FAM200AQ8TCP9 573 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 SPPL3Q8TCT6 385 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 PLEKHO2Q8TD55 490 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 MICAL1Q8TDZ2 1067 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 SLC35C1Q96A29 364 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 MRPL38Q96DV4 380 aaKnown RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 BORCS6Q96GS4 357 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 POP1Q99575 1024 aaKnown RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 TCF25Q9BQ70 676 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 TTPALQ9BTX7 342 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 ZBP1Q9H171 429 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 ALG13Q9NP73 1137 aaKnown RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP3-216ENST00000559873 MRPL17Q9NRX2 175 aaKnown RBP10.85□□□□□ -0.67
USP3-216ENST00000559873 CACNG4Q9UBN1 327 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 DSEQ9UL01 958 aa10.85□□□□□ -0.67
USP3-216ENST00000559873 MYO9BQ13459 2157 aa10.84□□□□□ -0.67
USP3-216ENST00000559873 KCNJ18B7U540 433 aa10.84□□□□□ -0.67
USP3-216ENST00000559873 GOLGA6L19H0YKK7 550 aa10.84□□□□□ -0.67
USP3-216ENST00000559873 HUS1O60921 280 aa10.84□□□□□ -0.67
USP3-216ENST00000559873 STAU1O95793 577 aaKnown RBP10.84□□□□□ -0.67
USP3-216ENST00000559873 AFPP02771 609 aaKnown RBP10.84□□□□□ -0.67
USP3-216ENST00000559873 C4BPAP04003 597 aaKnown RBP10.84□□□□□ -0.67
USP3-216ENST00000559873 CTSAP10619 480 aa10.84□□□□□ -0.67
USP3-216ENST00000559873 FOSL2P15408 326 aa10.84□□□□□ -0.67
USP3-216ENST00000559873 TYMPP19971 482 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms