RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 C4BPAP04003 597 aaKnown RBP22.94■■□□□ 1.26
CASC4-204ENST00000557945 ITGB1P05556 798 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 IGFBP6P24592 240 aaPredicted RBP22.94■■□□□ 1.26
CASC4-204ENST00000557945 GTF2H1P32780 548 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 KRT17Q04695 432 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 TRPC3Q13507 836 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 IQCB1Q15051 598 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 TDRD10Q5VZ19 366 aaKnown RBP22.94■■□□□ 1.26
CASC4-204ENST00000557945 SV2AQ7L0J3 742 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 C3orf58Q8NDZ4 430 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 BCL7CQ8WUZ0 217 aaPredicted RBP22.94■■□□□ 1.26
CASC4-204ENST00000557945 SLC35C1Q96A29 364 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 C11orf84Q9BUA3 381 aaPredicted RBP22.94■■□□□ 1.26
CASC4-204ENST00000557945 SIX4Q9UIU6 781 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 ADAM28Q9UKQ2 775 aa22.94■■□□□ 1.26
CASC4-204ENST00000557945 LAMA2P24043 3122 aaKnown RBP22.94■■□□□ 1.26
CASC4-204ENST00000557945 ANO9A1A5B4 782 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 C5orf67F2Z3F1 127 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 PIRO00625 290 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 ZACNQ401N2 412 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 TCP11X2Q5H9J9 407 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 CDKAL1Q5VV42 579 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 SCARA3Q6AZY7 606 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 LUZP1Q86V48 1076 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 FAM200AQ8TCP9 573 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 TMEM8AQ9HCN3 771 aa22.93■■□□□ 1.26
CASC4-204ENST00000557945 TMEM189-UBE2V1I3L0A0 370 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 CLSTN1O94985 981 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 CDK11BP21127 795 aaKnown RBP22.92■■□□□ 1.26
CASC4-204ENST00000557945 EEF1GP26641 437 aaKnown RBP22.92■■□□□ 1.26
CASC4-204ENST00000557945 MXI1P50539 228 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 MCCD1P59942 119 aaPredicted RBP22.92■■□□□ 1.26
CASC4-204ENST00000557945 GPM6BQ13491 265 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 KRT39Q6A163 491 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 ZNF560Q96MR9 790 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 ANP32EQ9BTT0 268 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 ALG13Q9NP73 1137 aaKnown RBP22.92■■□□□ 1.26
CASC4-204ENST00000557945 PUF60Q9UHX1 559 aaKnown RBP22.92■■□□□ 1.26
CASC4-204ENST00000557945 NLRC5Q86WI3 1866 aa22.92■■□□□ 1.26
CASC4-204ENST00000557945 TMEM265A0A087WTH1 108 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 GOLGA6L19H0YKK7 550 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 CST3P01034 146 aaPredicted RBP22.91■■□□□ 1.26
CASC4-204ENST00000557945 PRKCSHP14314 528 aaPredicted RBP22.91■■□□□ 1.26
CASC4-204ENST00000557945 BRCC3P46736 316 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 TAF6P49848 677 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 TPM4P67936 248 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 PLCB3Q01970 1234 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 KCNH2Q12809 1159 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 NCOA4Q13772 614 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 ZNF697Q5TEC3 545 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 FUT10Q6P4F1 479 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 CD300LGQ6UXG3 332 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 LRRC52Q8N7C0 313 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 ANKRD20A12PQ8NF67 263 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 CXorf38Q8TB03 319 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 TUBGCP2Q9BSJ2 902 aa22.91■■□□□ 1.26
CASC4-204ENST00000557945 SF3B1O75533 1304 aaKnown RBP eCLIP22.9■■□□□ 1.26
CASC4-204ENST00000557945 EPOPA6NHQ4 379 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 H3BNC9 293 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 I3L4J1 428 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 TRAPPC3O43617 180 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 AFPP02771 609 aaKnown RBP22.9■■□□□ 1.26
CASC4-204ENST00000557945 PNPLA4P41247 253 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 PIK3CAP42336 1068 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 FMO5P49326 533 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 LILRA4P59901 499 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 MAN2A1Q16706 1144 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 CBWD6Q4V339 395 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 CBWD3Q5JTY5 395 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 CBWD5Q5RIA9 395 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 DSTYKQ6XUX3 929 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 C15orf39Q6ZRI6 1047 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 GDPD5Q8WTR4 605 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 HPDLQ96IR7 371 aa22.9■■□□□ 1.26
CASC4-204ENST00000557945 TTYH1Q9H313 450 aaPredicted RBP22.9■■□□□ 1.26
CASC4-204ENST00000557945 RFXAPO00287 272 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 PES1O00541 588 aaKnown RBP22.89■■□□□ 1.26
CASC4-204ENST00000557945 GRM6O15303 877 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 CSPG5O95196 566 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 VNN1O95497 513 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 HLA-DRAP01903 254 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 MYL6P60660 151 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 MYL7Q01449 175 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 MYO1EQ12965 1108 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 SV2CQ496J9 727 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 TIGD5Q53EQ6 642 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 DDX53Q86TM3 631 aaKnown RBP22.89■■□□□ 1.26
CASC4-204ENST00000557945 RNF214Q8ND24 703 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 SPPL3Q8TCT6 385 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 TAS1R2Q8TE23 839 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 GPR62Q9BZJ7 368 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 HSD3B7Q9H2F3 369 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 TAB2Q9NYJ8 693 aa22.89■■□□□ 1.26
CASC4-204ENST00000557945 SPTLC1O15269 473 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 N4BP1O75113 896 aaKnown RBP22.89■■□□□ 1.25
CASC4-204ENST00000557945 TPM2P07951 284 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 ZNF18P17022 549 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 ELAVL2Q12926 359 aaKnown RBP22.89■■□□□ 1.25
CASC4-204ENST00000557945 KRT31Q15323 416 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 FAM171A1Q5VUB5 890 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms