RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 NAA35Q5VZE5 725 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 CC2D1AQ6P1N0 951 aaPredicted RBP13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 TMEM40Q8WWA1 233 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 TRIB2Q92519 343 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 LRRC1Q9BTT6 524 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 TRIM7Q9C029 511 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 KIF3CO14782 793 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 GPR32O75388 356 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 GPC5P78333 572 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 TRPC3Q13507 836 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 CLEC16AQ2KHT3 1053 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 AADACL2Q6P093 401 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 ENOSF1Q7L5Y1 443 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 IFNLR1Q8IU57 520 aaPredicted RBP13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 C1orf127Q8N9H9 656 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 XYLT2Q9H1B5 865 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 CEP104O60308 925 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 PGK1P00558 417 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 GNA15P30679 374 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 MARCKSL1P49006 195 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 CDH8P55286 799 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 SREBF2Q12772 1141 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 MESDQ14696 234 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 IFI16Q16666 785 aaKnown RBP13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF699Q32M78 642 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 DCAF12L1Q5VU92 463 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 ZSWIM1Q9BR11 485 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 EIF2AQ9BY44 585 aaKnown RBP13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 ATP8B3O60423 1300 aa13.64□□□□□ -0.23
VIPAS39-206ENST00000553888 B4GALT4O60513 344 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 NPTXRO95502 500 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 IGHA2P01877 340 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ITGB3P05106 788 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 C6orf222P0C671 652 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 HOXA11P31270 313 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 INHBEP58166 350 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 POU5F1BQ06416 359 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 FSCN1Q16658 493 aaKnown RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 TAF4BQ92750 862 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 NUP85Q9BW27 656 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 IMPG2Q9BZV3 1241 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 AP5M1Q9H0R1 490 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ABCB6Q9NP58 842 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 TSKSQ9UJT2 592 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 PCDHB2Q9Y5E7 798 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 THAP12O43422 761 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 CA12O43570 354 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 SASH3O75995 380 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 GJB6O95452 261 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 TNNC2P02585 160 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 UNGP13051 313 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ASPAP45381 313 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 FLT3LGP49771 235 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF211Q13398 564 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 DAB2IPQ5VWQ8 1189 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ACAD10Q6JQN1 1059 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 TMCO3Q6UWJ1 677 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 SOCS4Q8WXH5 440 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 CCDC102AQ96A19 550 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ANKRD36BP1Q96IX9 119 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 AP1M1Q9BXS5 423 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 PDCL3Q9H2J4 239 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 DMGDHQ9UI17 866 aaKnown RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 NRCAMQ92823 1304 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 A0A1B0GUA9 196 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 MYBL2P10244 700 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 MCF2P10911 925 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 GZMAP12544 262 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 PAFAH1B1P43034 410 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 TM4SF4P48230 202 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 PRKCZQ05513 592 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 CFAP221Q4G0U5 840 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 UBR7Q8N806 425 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 KRT35Q92764 455 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 HES6Q96HZ4 224 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 GDAP1L1Q96MZ0 367 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 SDCBP2Q9H190 292 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 CISHQ9NSE2 258 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ARGLU1Q9NWB6 273 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 AMFRQ9UKV5 643 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 ALG6Q9Y672 507 aa13.63□□□□□ -0.23
VIPAS39-206ENST00000553888 RRN3P2A6NIE6 340 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 TMEM88BA6NKF7 163 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 DDX3YO15523 660 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ZRANB2O95218 330 aaKnown RBP eCLIP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 CATSPER4Q7RTX7 472 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF572Q7Z3I7 529 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ADAT2Q7Z6V5 191 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ALG3Q92685 438 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 APOL6Q9BWW8 343 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 NIF3L1Q9GZT8 377 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 SNTG2Q9NY99 539 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 CNOT8Q9UFF9 292 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 HMGXB4Q9UGU5 601 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 RAB21Q9UL25 225 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 MBLAC1A4D2B0 266 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ZSCAN5CA6NGD5 496 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 DCAF8L1A6NGE4 600 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 HAS3O00219 553 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 RRM1P23921 792 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms