RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CLIC6Q96NY7 704 aa6.73□□□□□ -1.33
SCFD1-208ENST00000553278 PCDH18Q9HCL0 1135 aa6.73□□□□□ -1.33
SCFD1-208ENST00000553278 SLAMF7Q9NQ25 335 aa6.73□□□□□ -1.33
SCFD1-208ENST00000553278 VPS45Q9NRW7 570 aa6.73□□□□□ -1.33
SCFD1-208ENST00000553278 ZNF212Q9UDV6 495 aa6.73□□□□□ -1.33
SCFD1-208ENST00000553278 OR14I1A6ND48 311 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 PYCARD-AS1I3L0S3 204 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 MSTNO14793 375 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 ITGA10O75578 1167 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 ALDH1A2O94788 518 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 BAIAP3O94812 1187 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 MATN4O95460 622 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 ABHD16AO95870 558 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 CD4P01730 458 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 C8BP07358 591 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 CYP2C8P10632 490 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 CAPN3P20807 821 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 KLRC1P26715 233 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 PCSK1P29120 753 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 PTPN7P35236 360 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 POLE2P56282 527 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 FOXO4P98177 505 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 CREMQ03060 361 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 FSTL1Q12841 308 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 PHF19Q5T6S3 580 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 TANGO2Q6ICL3 276 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 C4orf50Q6ZRC1 276 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 LRRTM4Q86VH4 590 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 MICU3Q86XE3 530 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 TRMT2AQ8IZ69 625 aaKnown RBP6.72□□□□□ -1.33
SCFD1-208ENST00000553278 ABHD4Q8TB40 342 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 PYM1Q9BRP8 204 aaKnown RBP6.72□□□□□ -1.33
SCFD1-208ENST00000553278 RNF32Q9H0A6 362 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 TMEM8AQ9HCN3 771 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 UBN1Q9NPG3 1134 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 A1CFQ9NQ94 594 aaKnown RBP6.72□□□□□ -1.33
SCFD1-208ENST00000553278 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-208ENST00000553278 MOCS1Q9NZB8 636 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 KIF17Q9P2E2 1029 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 POLG2Q9UHN1 485 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 VWA7Q9Y334 891 aa6.72□□□□□ -1.33
SCFD1-208ENST00000553278 MBD3L4A6NDZ8 208 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 MBD3L3A6NE82 208 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 FIBPO43427 364 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 NDST3O95803 873 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 CHGBP05060 677 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 POLBP06746 335 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 ITGA5P08648 1049 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 CKMT1AP12532 417 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 NCAM1P13591 858 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 GYPEP15421 78 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 NOMO3P69849 1222 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 MXRA7P84157 204 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 ZNF200P98182 395 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 CTBP1Q13363 440 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 DOC2BQ14184 412 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 TOMM20Q15388 145 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 PABPC1LQ4VXU2 614 aaKnown RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 CCDC93Q567U6 631 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 RRAGBQ5VZM2 374 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 ARL6IP4Q66PJ3 421 aaKnown RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 BORAQ6PGQ7 559 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 MOGAT3Q86VF5 341 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 TMTC1Q8IUR5 882 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 YAF2Q8IY57 180 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 FAM9BQ8IZU0 186 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 PCSK9Q8NBP7 692 aaKnown RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 SPPL3Q8TCT6 385 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 STYXQ8WUJ0 223 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 STON2Q8WXE9 905 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 ASB12Q8WXK4 309 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 EID2BQ96D98 161 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 ZBTB10Q96DT7 871 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 INTS4Q96HW7 963 aaKnown RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 GDF15Q99988 308 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 STK31Q9BXU1 1019 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.71□□□□□ -1.341e-17■■■□□ 18.3
SCFD1-208ENST00000553278 C11orf54Q9H0W9 315 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 OSBPL5Q9H0X9 879 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 RIC8AQ9NPQ8 531 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 TBC1D23Q9NUY8 699 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 CFAP97Q9P2B7 532 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 CDC42EP3Q9UKI2 254 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 HDAC9Q9UKV0 1011 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 RUVBL1Q9Y265 456 aaKnown RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 AFG3L2Q9Y4W6 797 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 ACTL7AQ9Y615 435 aa6.71□□□□□ -1.34
SCFD1-208ENST00000553278 SETD1BQ9UPS6 1966 aaKnown RBP6.71□□□□□ -1.34
SCFD1-208ENST00000553278 PIP5K1BO14986 540 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 GNAI2P04899 355 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 MTHFD1P11586 935 aaKnown RBP6.7□□□□□ -1.34
SCFD1-208ENST00000553278 PAPOLAP51003 745 aaKnown RBP6.7□□□□□ -1.34
SCFD1-208ENST00000553278 POU6F2P78424 691 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-208ENST00000553278 KIF22Q14807 665 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 SULT6B1Q6IMI4 303 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 CLEC14AQ86T13 490 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 TBC1D1Q86TI0 1168 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-208ENST00000553278 GATAD2AQ86YP4 633 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 PLXDC1Q8IUK5 500 aa6.7□□□□□ -1.34
SCFD1-208ENST00000553278 FTSJ3Q8IY81 847 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms