RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RPL17P18621 184 aaKnown RBP15.27■□□□□ 0.04
PTCH1-226ENST00000553011 FGFR3P22607 806 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 TKTP29401 623 aaKnown RBP15.27■□□□□ 0.04
PTCH1-226ENST00000553011 LTBRP36941 435 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 DLX2Q07687 328 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-226ENST00000553011 MORC3Q14149 939 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 PSMD6Q15008 389 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 COBLL1Q53SF7 1204 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 SCARA3Q6AZY7 606 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 LLGL2Q6P1M3 1020 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-226ENST00000553011 NT5DC4Q86YG4 428 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 ADSSL1Q8N142 457 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 C1orf127Q8N9H9 656 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 OR5B17Q8NGF7 314 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 GPT2Q8TD30 523 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 PLEKHO2Q8TD55 490 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 CCDC127Q96BQ5 260 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 MFSD14AQ96MC6 490 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 MTMR12Q9C0I1 747 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 GZF1Q9H116 711 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-226ENST00000553011 INTS13Q9NVM9 706 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 KIAA1468Q9P260 1216 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 THEGQ9P2T0 379 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 COG5Q9UP83 839 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 SSX2IPQ9Y2D8 614 aa15.27■□□□□ 0.04
PTCH1-226ENST00000553011 DOCK6Q96HP0 2047 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 H3BQ06 376 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 PIRO00625 290 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 TEX28O15482 410 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 NCK2O43639 380 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 TBX10O75333 385 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 TMEM191BP0C7N4 346 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 DLATP10515 647 aaKnown RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 KCNA5P22460 613 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 NR2F2P24468 414 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 KCNC3Q14003 757 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 MYBPC2Q14324 1141 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 SURF1Q15526 300 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 PSMD5Q16401 504 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 NFIL3Q16649 462 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 CEP135Q66GS9 1140 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 CENPPQ6IPU0 288 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 GLYCTKQ8IVS8 523 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 LNX1Q8TBB1 728 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 CACTINQ8WUQ7 758 aaKnown RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 TMEM174Q8WUU8 243 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 PIK3R5Q8WYR1 880 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 SUSD3Q96L08 255 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 POP1Q99575 1024 aaKnown RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 CGRRF1Q99675 332 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 EMILIN2Q9BXX0 1053 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 GTPBP4Q9BZE4 634 aaKnown RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 RXFP1Q9HBX9 757 aa15.26■□□□□ 0.03
PTCH1-226ENST00000553011 BARX2Q9UMQ3 279 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-226ENST00000553011 TRIM49BA6NDI0 452 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 PPP1R3GB7ZBB8 358 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 SPTLC1O15269 473 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 ITGB3P05106 788 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 EPCAMP16422 314 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 KLRC2P26717 231 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 POLR2BP30876 1174 aaKnown RBP15.25■□□□□ 0.03
PTCH1-226ENST00000553011 AARSP49588 968 aaKnown RBP eCLIP15.25■□□□□ 0.03
PTCH1-226ENST00000553011 NDUFV1P49821 464 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 PMS1P54277 932 aaKnown RBP15.25■□□□□ 0.03
PTCH1-226ENST00000553011 LILRA4P59901 499 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 ADAM9Q13443 819 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 EDRF1Q3B7T1 1238 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 KLHL10Q6JEL2 608 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 WDR49Q8IV35 697 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.25■□□□□ 0.03
PTCH1-226ENST00000553011 GPR65Q8IYL9 337 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 CXorf38Q8TB03 319 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 SLC22A17Q8WUG5 538 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 EEF2KMTQ96G04 330 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 FNBP1Q96RU3 617 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 NUP62CLQ9H1M0 184 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 CLEC1BQ9P126 229 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 SIX4Q9UIU6 781 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 AGAP1Q9UPQ3 857 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 HCFC2Q9Y5Z7 792 aa15.25■□□□□ 0.03
PTCH1-226ENST00000553011 C2orf16Q68DN1 1984 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 M0QZQ0 153 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 SYN3O14994 580 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 ADAM12O43184 909 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 AKAP3O75969 853 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 TNNC2P02585 160 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 ADH1AP07327 375 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 TNNI1P19237 187 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 CCNE1P24864 410 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 RPL13P26373 211 aaKnown RBP15.24■□□□□ 0.03
PTCH1-226ENST00000553011 TAF6P49848 677 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 STIM1Q13586 685 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 CLUL1Q15846 466 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 DUOXA2Q1HG44 320 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 VARS2Q5ST30 1063 aaKnown RBP15.24■□□□□ 0.03
PTCH1-226ENST00000553011 ANKRD40Q6AI12 368 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 RSPO2Q6UXX9 243 aaPredicted RBP15.24■□□□□ 0.03
PTCH1-226ENST00000553011 DSTYKQ6XUX3 929 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 PARD3BQ8TEW8 1205 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms