RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KRT7P08729 469 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 MARCKSL1P49006 195 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 EIF3EP60228 445 aaKnown RBP16.58■□□□□ 0.24
CUX1-211ENST00000546411 DAB2IPQ5VWQ8 1189 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 RAPH1Q70E73 1250 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 NOP9Q86U38 636 aaKnown RBP16.58■□□□□ 0.24
CUX1-211ENST00000546411 CCDC33Q8N5R6 958 aa16.58■□□□□ 0.24
CUX1-211ENST00000546411 KDM3BQ7LBC6 1761 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 CCDC195A0A1B0GUA6 201 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 A8MXQ7 604 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 CUL2Q13617 745 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 HIF1AQ16665 826 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 IRF2BP2Q7Z5L9 587 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 C4orf19Q8IY42 314 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 HACE1Q8IYU2 909 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 RBM46Q8TBY0 533 aaKnown RBP16.57■□□□□ 0.24
CUX1-211ENST00000546411 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.57■□□□□ 0.245e-7■■■■■ 64.8
CUX1-211ENST00000546411 SYF2O95926 243 aaKnown RBP16.57■□□□□ 0.24
CUX1-211ENST00000546411 SLC8A1P32418 973 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 SLC1A1P43005 524 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 TFDP2Q14188 446 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 TSNAXIP1Q2TAA8 658 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 LRIG3Q6UXM1 1119 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 PARD3BQ8TEW8 1205 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 LRRC15Q8TF66 581 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 C2orf40Q9H1Z8 148 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 ETNK1Q9HBU6 452 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 HAUS2Q9NVX0 235 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 EFCAB12Q6NXP0 572 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 ARHGAP24Q8N264 748 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 GPRASP2Q96D09 838 aa16.57■□□□□ 0.24
CUX1-211ENST00000546411 FNDC3AQ9Y2H6 1198 aaKnown RBP16.57■□□□□ 0.24
CUX1-211ENST00000546411 MAFGO15525 162 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 APRTP07741 180 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 ITIH2P19823 946 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 TMPRSS15P98073 1019 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 CYP24A1Q07973 514 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 LMNTD2Q8IXW0 634 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 LNX1Q8TBB1 728 aaPredicted RBP16.56■□□□□ 0.24
CUX1-211ENST00000546411 AP5M1Q9H0R1 490 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 SPC25Q9HBM1 224 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 VWA5AO00534 786 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 NOL4O94818 638 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 FAM107AO95990 144 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 CAV1Q03135 178 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 HGSNATQ68CP4 663 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 KCTD17Q8N5Z5 321 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 EMC1Q8N766 993 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 PDCD7Q8N8D1 485 aaKnown RBP16.56■□□□□ 0.24
CUX1-211ENST00000546411 FIS1Q9Y3D6 152 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 CYP3A7-CYP3A51PA0A087WV96 503 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 FANCGO15287 622 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 XPOTO43592 962 aaKnown RBP16.56■□□□□ 0.24
CUX1-211ENST00000546411 AGTP01019 485 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 CYP3A7P24462 503 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 SGSM1Q2NKQ1 1148 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 FEZF2Q8TBJ5 459 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 NID2Q14112 1375 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 CDH16O75309 829 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 LCP1P13796 627 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 HNRNPH3P31942 346 aaKnown RBP16.56■□□□□ 0.24
CUX1-211ENST00000546411 HSPA9P38646 679 aaKnown RBP16.56■□□□□ 0.24
CUX1-211ENST00000546411 ATF7IP2Q5U623 682 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 TRAPPC12Q8WVT3 735 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 RAPGEF5Q92565 580 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 TRABDQ9H4I3 376 aa16.56■□□□□ 0.24
CUX1-211ENST00000546411 COPEO14579 308 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 MYL6P60660 151 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 NME3Q13232 169 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 FAXCQ5TGI0 409 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 TTC13Q8NBP0 860 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 KCNV2Q8TDN2 545 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 ATXN7L3BQ96GX2 97 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 RAB6BQ9NRW1 208 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 INPP5FQ9Y2H2 1132 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 NLRP11P59045 1033 aaKnown RBP16.55■□□□□ 0.24
CUX1-211ENST00000546411 AMHR2Q16671 573 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 GLRA4Q5JXX5 417 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 KIF2BQ8N4N8 673 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 DEPDC1BQ8WUY9 529 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 KLC2Q9H0B6 622 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 CHMP2BQ9UQN3 213 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 RBP3P10745 1247 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 MAGEA4P43358 317 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 FAM83AQ86UY5 434 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 TTYH3Q9C0H2 523 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 NIF3L1Q9GZT8 377 aa16.55■□□□□ 0.24
CUX1-211ENST00000546411 BCL9LQ86UU0 1499 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 CCDC78A2IDD5 438 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 SLC4A1P02730 911 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 ADRB2P07550 413 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 GZMAP12544 262 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 ICE2Q659A1 982 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 RFX8Q6ZV50 586 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 SMC1BQ8NDV3 1235 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 HIPK4Q8NE63 616 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 CAVIN3Q969G5 261 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 LRRC37BQ96QE4 947 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 TMBIM4Q9HC24 238 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 IQANK1A0A1B0GTG1 560 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms