RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 DUX4Q9UBX2 424 aa16.2■□□□□ 0.18
CHD4-210ENST00000544040 C3orf70A6NLC5 250 aaPredicted RBP16.2■□□□□ 0.18
CHD4-210ENST00000544040 RNF103O00237 685 aa16.2■□□□□ 0.18
CHD4-210ENST00000544040 GRAP2O75791 330 aa16.2■□□□□ 0.18
CHD4-210ENST00000544040 MTERF3Q96E29 417 aa16.2■□□□□ 0.18
CHD4-210ENST00000544040 CNDP1Q96KN2 507 aa16.2■□□□□ 0.18
CHD4-210ENST00000544040 TMEM120BA0PK00 339 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 PLIN5Q00G26 463 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 KRT76Q01546 638 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 FAM20AQ96MK3 541 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 BSDC1Q9NW68 430 aaPredicted RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 ZC3H4Q9UPT8 1303 aaKnown RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 WEE2P0C1S8 567 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 CYP2C19P33261 490 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 TAP1Q03518 808 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 CHI3L2Q15782 390 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 CELF4Q9BZC1 486 aaKnown RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 GID8Q9NWU2 228 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 CACNA2D2Q9NY47 1150 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 MYO3BQ8WXR4 1341 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 ATMINO43313 823 aaPredicted RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 HSD17B4P51659 736 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 WASHC5Q12768 1159 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 LRIG3Q6UXM1 1119 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 APOL5Q9BWW9 433 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 C2orf40Q9H1Z8 148 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 CAPN10Q9HC96 672 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 RAD51CO43502 376 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 RALAP11233 206 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 LSP1P33241 339 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 RAB42Q8N4Z0 105 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 APPL2Q8NEU8 664 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 TRIP4Q15650 581 aaPredicted RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 MAPRE1Q15691 268 aaKnown RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 CIAPIN1Q6FI81 312 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 SHCBP1Q8NEM2 672 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 MDM1Q8TC05 714 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 LATS2Q9NRM7 1088 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 SLC1A1P43005 524 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 ZNF786Q8N393 782 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 NSUN6Q8TEA1 469 aaKnown RBP16.19■□□□□ 0.18
CHD4-210ENST00000544040 RNF146Q9NTX7 359 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 NSMCE4AQ9NXX6 385 aa16.19■□□□□ 0.18
CHD4-210ENST00000544040 TPST1O60507 370 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 NDUFS3O75489 264 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 IRF1P10914 325 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 AKR1B1P15121 316 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 TRIM25Q14258 630 aaKnown RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 CENPPQ6IPU0 288 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 C3orf62Q6ZUJ4 267 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 EFHBQ8N7U6 833 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 BARHL2Q9NY43 387 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 C6orf203Q9P0P8 240 aaPredicted RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 CFAP43Q8NDM7 1665 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 RGS5O15539 181 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 BRD2P25440 801 aaKnown RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 GRM4Q14833 912 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 DUOXA2Q1HG44 320 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 TTC33Q6PID6 262 aaPredicted RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 FRMD5Q7Z6J6 570 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 AGPAT5Q9NUQ2 364 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 GRK2P25098 689 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 ZIM3Q96PE6 472 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 ASNSP08243 561 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 GUCY1A2P33402 732 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 RCSD1Q6JBY9 416 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 POTEAQ6S8J7 498 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 P3H2Q8IVL5 708 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 ATPAF2Q8N5M1 289 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 PCYOX1LQ8NBM8 494 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 SENP7Q9BQF6 1050 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 PNMA8BQ9ULN7 279 aaPredicted RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 ZNF335Q9H4Z2 1342 aaPredicted RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 A0A1W2PQC6 194 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 GALCP54803 685 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 HAUS6Q7Z4H7 955 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 FGD2Q7Z6J4 655 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 ARHGEF26Q96DR7 871 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 PABPC5Q96DU9 382 aaKnown RBP16.18■□□□□ 0.18
CHD4-210ENST00000544040 CMTM5Q96DZ9 223 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 MANSC1Q9H8J5 431 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 DTNAQ9Y4J8 743 aa16.18■□□□□ 0.18
CHD4-210ENST00000544040 KLHL2O95198 593 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 ACOT2P49753 483 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 KLK7P49862 253 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 RAD51Q06609 339 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 SMTNL2Q2TAL5 461 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 SYDE1Q6ZW31 735 aaPredicted RBP16.17■□□□□ 0.18
CHD4-210ENST00000544040 TRMT2AQ8IZ69 625 aaKnown RBP16.17■□□□□ 0.18
CHD4-210ENST00000544040 GUF1Q8N442 669 aaKnown RBP16.17■□□□□ 0.18
CHD4-210ENST00000544040 SH3GL1Q99961 368 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 GEMIN8Q9NWZ8 242 aaKnown RBP16.17■□□□□ 0.18
CHD4-210ENST00000544040 RGL1Q9NZL6 768 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 SEPT3Q9UH03 358 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 SMNDC1O75940 238 aaKnown RBP eCLIP16.17■□□□□ 0.188e-12■■■■□ 26.7
CHD4-210ENST00000544040 FMR1Q06787 632 aaKnown RBP eCLIP16.17■□□□□ 0.183e-7■■■■□ 24.1
CHD4-210ENST00000544040 TRIM16LQ309B1 348 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 WDR72Q3MJ13 1102 aa16.17■□□□□ 0.18
CHD4-210ENST00000544040 CCNI2Q6ZMN8 369 aaPredicted RBP16.17■□□□□ 0.18
CHD4-210ENST00000544040 ENOSF1Q7L5Y1 443 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms