RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 PODXLO00592 558 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 PLSCR1O15162 318 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 RXRBP28702 533 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 GCLCP48506 637 aaPredicted RBP14.4□□□□□ -0.1
PTPN1-202ENST00000541713 MYL6P60660 151 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 LY6KQ17RY6 165 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 AGBL2Q5U5Z8 902 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 SLC9A9Q8IVB4 645 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 MAP4K3Q8IVH8 894 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 RTKN2Q8IZC4 609 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 ANKS4BQ8N8V4 417 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 NETO2Q8NC67 525 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 OSBPL8Q9BZF1 889 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 INO80BQ9C086 356 aaPredicted RBP14.4□□□□□ -0.1
PTPN1-202ENST00000541713 ATP6V0A4Q9HBG4 840 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 KCND2Q9NZV8 630 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 AGTPBP1Q9UPW5 1226 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 IVNS1ABPQ9Y6Y0 642 aa14.4□□□□□ -0.1
PTPN1-202ENST00000541713 CES2O00748 559 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 PSAPP07602 524 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 MAPTP10636 758 aaKnown RBP14.39□□□□□ -0.11
PTPN1-202ENST00000541713 ANKRD20A8PQ5CZ79 823 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 C6orf118Q5T5N4 469 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 SLC7A3Q8WY07 619 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 FAM129AQ9BZQ8 928 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 ADAM7Q9H2U9 754 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.39□□□□□ -0.11
PTPN1-202ENST00000541713 RASA4BC9J798 803 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 RASA4O43374 803 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 UBOX5O94941 541 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 DNAJC3Q13217 504 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 ERMARDQ5T6L9 678 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 MFSD7Q6UXD7 560 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 NSUN6Q8TEA1 469 aaKnown RBP14.39□□□□□ -0.11
PTPN1-202ENST00000541713 RBM15Q96T37 977 aaKnown RBP eCLIP14.39□□□□□ -0.112e-6■■■□□ 15
PTPN1-202ENST00000541713 AAASQ9NRG9 546 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 FNTAP49354 379 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 ARSEP51690 589 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 JAK3P52333 1124 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 MKRN3Q13064 507 aaKnown RBP14.39□□□□□ -0.11
PTPN1-202ENST00000541713 C11orf63Q6NUN7 778 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 ZNF449Q6P9G9 518 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 VSIG10LQ86VR7 867 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 ZBED8Q8IZ13 594 aa14.39□□□□□ -0.11
PTPN1-202ENST00000541713 DDX1Q92499 740 aaKnown RBP14.39□□□□□ -0.11
PTPN1-202ENST00000541713 KCNJ2P63252 427 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 NCOA4Q13772 614 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 MOB2Q70IA6 237 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 RHPN2Q8IUC4 686 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 SLC17A8Q8NDX2 589 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 KCNV2Q8TDN2 545 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 IWS1Q96ST2 819 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 PLVAPQ9BX97 442 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 SLCO1B3Q9NPD5 702 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 GRIN3BO60391 1043 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 HOXA7P31268 230 aaPredicted RBP14.38□□□□□ -0.11
PTPN1-202ENST00000541713 NCKAP1LP55160 1127 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 EIF3BP55884 814 aaKnown RBP14.38□□□□□ -0.11
PTPN1-202ENST00000541713 RNASELQ05823 741 aaKnown RBP14.38□□□□□ -0.11
PTPN1-202ENST00000541713 TTLL12Q14166 644 aaPredicted RBP14.38□□□□□ -0.11
PTPN1-202ENST00000541713 SIX1Q15475 284 aaPredicted RBP14.38□□□□□ -0.11
PTPN1-202ENST00000541713 LIN9Q5TKA1 542 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 GADL1Q6ZQY3 521 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 RNF149Q8NC42 400 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 HSPH1Q92598 858 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 IMPG2Q9BZV3 1241 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 ZNF302Q9NR11 478 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 ANKRD31Q8N7Z5 1873 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 TRPC3Q13507 836 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 CYB5D1Q6P9G0 228 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 COPS5Q92905 334 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 CALN1Q9BXU9 219 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 POLIQ9UNA4 740 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 NAALADL1Q9UQQ1 740 aa14.38□□□□□ -0.11
PTPN1-202ENST00000541713 EXOC1LA0A1B0GW35 172 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 VNN1O95497 513 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 CYP1A2P05177 515 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 GZMAP12544 262 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 RARGP13631 454 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 ZC3H18Q86VM9 953 aaKnown RBP14.37□□□□□ -0.11
PTPN1-202ENST00000541713 CCDC63Q8NA47 563 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 PRPF31Q8WWY3 499 aaKnown RBP14.37□□□□□ -0.11
PTPN1-202ENST00000541713 SNF8Q96H20 258 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 TGS1Q96RS0 853 aaKnown RBP14.37□□□□□ -0.11
PTPN1-202ENST00000541713 RPS6KC1Q96S38 1066 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 DCLK3Q9C098 648 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 NINJ2Q9NZG7 142 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 AGAP1Q9UPQ3 857 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 LOC102724159A0A0B4J2E5 919 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 GLRA2P23416 452 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 BACE1P56817 501 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 EFTUD2Q15029 972 aaKnown RBP eCLIP14.37□□□□□ -0.11
PTPN1-202ENST00000541713 PWP2Q15269 919 aaKnown RBP14.37□□□□□ -0.11
PTPN1-202ENST00000541713 CNGA2Q16280 664 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 FAXCQ5TGI0 409 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 USP37Q86T82 979 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 ZNF280CQ8ND82 737 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 PSPC1Q8WXF1 523 aaKnown RBP14.37□□□□□ -0.11
PTPN1-202ENST00000541713 PCDHB2Q9Y5E7 798 aa14.37□□□□□ -0.11
PTPN1-202ENST00000541713 CCT8L1PA6NM43 557 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms