RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	TYRP1	P17643	537 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	CDK11B	P21127	795 aa	Known RBP	5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	SLC6A4	P31645	630 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	MPL	P40238	635 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	SLFN5	Q08AF3	891 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	INAVA	Q3KP66	663 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	SYDE2	Q5VT97	1194 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	NSUN7	Q8NE18	718 aa	Known RBP	5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	ZNF764	Q96H86	408 aa	Predicted RBP	5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	COQ10A	Q96MF6	247 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	PRDM13	Q9H4Q3	707 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	UNKL	Q9H9P5	680 aa	Known RBP	5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	GALNT9	Q9HCQ5	603 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	TBCCD1	Q9NVR7	557 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	PTGFRN	Q9P2B2	879 aa		5.24	□□□□□ -1.57
PRKDC-210	ENST00000541488	SPATA31A6	Q5VVP1	1343 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	KLHL33	A6NCF5	533 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	CCDC154	A6NI56	674 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	HTRA2	O43464	458 aa	Predicted RBP	5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	ESRRB	O95718	433 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	CTXN1	P60606	82 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	UTP14C	Q5TAP6	766 aa	Known RBP	5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488		Q6ZNX1	250 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	RD3	Q7Z3Z2	195 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	NECAB2	Q7Z6G3	386 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	PNMA8A	Q86V59	439 aa	Predicted RBP	5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	ADGRG3	Q86Y34	549 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	HDAC10	Q969S8	669 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	TMEM125	Q96AQ2	219 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	TEKT5	Q96M29	485 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	PNKP	Q96T60	521 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	R3HDML	Q9H3Y0	253 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	KIAA1586	Q9HCI6	787 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	KCNE5	Q9UJ90	142 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	SLC45A2	Q9UMX9	530 aa		5.23	□□□□□ -1.57
PRKDC-210	ENST00000541488	MASP2	O00187	686 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	MGST3	O14880	152 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	HAUS5	O94927	633 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	CD1A	P06126	327 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	SLC16A1	P53985	500 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	AMPD3	Q01432	767 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	ATP2B3	Q16720	1220 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	PTPN21	Q16825	1174 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	ERCC6L	Q2NKX8	1250 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	UAP1L1	Q3KQV9	507 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	FLYWCH1	Q4VC44	716 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	ARMC6	Q6NXE6	501 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	FAM43A	Q8N2R8	423 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	SIMC1	Q8NDZ2	872 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	FBXO41	Q8TF61	875 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	NTN5	Q8WTR8	489 aa	Predicted RBP	5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	NUP133	Q8WUM0	1156 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	BOD1	Q96IK1	185 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	CLPTM1L	Q96KA5	538 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	BBC3	Q96PG8	261 aa	Predicted RBP	5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	AIFM2	Q9BRQ8	373 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	VSX1	Q9NZR4	365 aa	Predicted RBP	5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	SERPINB13	Q9UIV8	391 aa		5.22	□□□□□ -1.57
PRKDC-210	ENST00000541488	TRGV11	A0A075B6L2	103 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	GABRD	O14764	452 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	EDNRB	P24530	442 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	VAV2	P52735	878 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	CDC42EP1	Q00587	391 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	ODF1	Q14990	250 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	SF3B3	Q15393	1217 aa	Known RBP	5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	CD300E	Q496F6	205 aa	Predicted RBP	5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	PRR16	Q569H4	304 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	DACT2	Q5SW24	774 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	PAPD7	Q5XG87	772 aa	Known RBP	5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	SP5	Q6BEB4	398 aa	Predicted RBP	5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	FBXO42	Q6P3S6	717 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	GADL1	Q6ZQY3	521 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	TSHZ1	Q6ZSZ6	1077 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	ARHGEF25	Q86VW2	580 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	PRPF38A	Q8NAV1	312 aa	Known RBP	5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	IFI44	Q8TCB0	444 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	SSH3	Q8TE77	659 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	VRK1	Q99986	396 aa	Predicted RBP	5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	IMPG2	Q9BZV3	1241 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	FAM30A	Q9NZY2	134 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	LRIT1	Q9P2V4	623 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	TLK1	Q9UKI8	766 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	IPP	Q9Y573	584 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	INSL6	Q9Y581	213 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	MRFAP1	Q9Y605	127 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	MAST3	O60307	1309 aa		5.21	□□□□□ -1.58
PRKDC-210	ENST00000541488	SHTN1	A0MZ66	631 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	FZD9	O00144	591 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	MTHFD1	P11586	935 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	C21orf58	P58505	322 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	BLOC1S1	P78537	153 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	MRPS35	P82673	323 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	PABPC1L	Q4VXU2	614 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	COLGALT2	Q8IYK4	626 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	BOLL	Q8N9W6	283 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	SLC17A8	Q8NDX2	589 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	ACTRT2	Q8TDY3	377 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	COA7	Q96BR5	231 aa		5.2	□□□□□ -1.58
PRKDC-210	ENST00000541488	PACSIN1	Q9BY11	444 aa		5.2	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms