RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 C9orf57Q5W0N0 161 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 OTOP2Q7RTS6 562 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 LRRC43Q8N309 656 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 C3orf58Q8NDZ4 430 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 TAF4BQ92750 862 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 KIF12Q96FN5 646 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 CWH43Q9H720 699 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 APOBEC3GQ9HC16 384 aaKnown RBP11.38□□□□□ -0.59
VPS33A-204ENST00000540669 MARCH5Q9NX47 278 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 GCNT4Q9P109 453 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 PARP2Q9UGN5 583 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 DAAM1Q9Y4D1 1078 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 COL4A4P53420 1690 aaPredicted RBP11.38□□□□□ -0.59
VPS33A-204ENST00000540669 PTPRDP23468 1912 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 C19orf67A6NJJ6 358 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 SPTLC1O15269 473 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 CBFA2T2O43439 604 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 XPOTO43592 962 aaKnown RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 CST3P01034 146 aaPredicted RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 ITGB3P05106 788 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 THP07101 528 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 TMEM191BP0C7N4 346 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 TNNI1P19237 187 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 IGFBP6P24592 240 aaPredicted RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 RPL9P32969 192 aaKnown RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 TFAMQ00059 246 aaKnown RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 GCNT1Q02742 428 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 NCOA4Q13772 614 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 SYCP1Q15431 976 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 EXOC3L4Q17RC7 722 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 TCERG1LQ5VWI1 586 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 GBP6Q6ZN66 633 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 ZNF280BQ86YH2 543 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 HERC6Q8IVU3 1022 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 BEST2Q8NFU1 509 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 CLP1Q92989 425 aaKnown RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 ANKRD36BP1Q96IX9 119 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 UROC1Q96N76 676 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 RPS6KC1Q96S38 1066 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 PAAF1Q9BRP4 392 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 TMEM175Q9BSA9 504 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 BCO2Q9BYV7 579 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 INTS2Q9H0H0 1204 aaKnown RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 FAM124BQ9H5Z6 455 aaPredicted RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 NRDE2Q9H7Z3 1164 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 GOLGA2P5Q9HBQ8 144 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 RAB20Q9NX57 234 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 GDAP2Q9NXN4 497 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 DPP3Q9NY33 737 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 KANSL3Q9P2N6 904 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 HCSTQ9UBK5 93 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 AJAP1Q9UKB5 411 aaPredicted RBP11.37□□□□□ -0.59
VPS33A-204ENST00000540669 PCDHB7Q9Y5E2 793 aa11.37□□□□□ -0.59
VPS33A-204ENST00000540669 A0A1W2PQJ5 194 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 SERPINC1P01008 464 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 TNNC2P02585 160 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 SLC9A1P19634 815 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 CDK11BP21127 795 aaKnown RBP11.36□□□□□ -0.59
VPS33A-204ENST00000540669 RFX1P22670 979 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 PAX3P23760 479 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 POLR2BP30876 1174 aaKnown RBP11.36□□□□□ -0.59
VPS33A-204ENST00000540669 ATICP31939 592 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 ASPAP45381 313 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 KLK7P49862 253 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 JAM2P57087 298 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 LRIT3Q3SXY7 679 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 PHLDB3Q6NSJ2 640 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.36□□□□□ -0.59
VPS33A-204ENST00000540669 TMCO2Q7Z6W1 182 aaPredicted RBP11.36□□□□□ -0.59
VPS33A-204ENST00000540669 EHBP1Q8NDI1 1231 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 URGCPQ8TCY9 931 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 CACTINQ8WUQ7 758 aaKnown RBP11.36□□□□□ -0.59
VPS33A-204ENST00000540669 BAP1Q92560 729 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 GPR88Q9GZN0 384 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 APEX2Q9UBZ4 518 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 DNAJB4Q9UDY4 337 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 CNTN6Q9UQ52 1028 aa11.36□□□□□ -0.59
VPS33A-204ENST00000540669 PATJQ8NI35 1801 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 CDH23Q9H251 3354 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 M0QZQ0 153 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 KIF4AO95239 1232 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 ADCY5O95622 1261 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 POMCP01189 267 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 GYPCP04921 128 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 ACO1P21399 889 aaKnown RBP11.35□□□□□ -0.59
VPS33A-204ENST00000540669 FECHP22830 423 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 PNPLA4P41247 253 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 PIK3CAP42336 1068 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 CLCNKBP51801 687 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 ZNF132P52740 706 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 MYL6P60660 151 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 NOP14P78316 857 aaKnown RBP11.35□□□□□ -0.59
VPS33A-204ENST00000540669 APBA1Q02410 837 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 UBXN1Q04323 297 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 INCA1Q0VD86 236 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 SHHQ15465 462 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 FILIP1LQ4L180 1135 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 FKBP15Q5T1M5 1219 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 KLHDC7AQ5VTJ3 777 aa11.35□□□□□ -0.59
VPS33A-204ENST00000540669 FAM109BQ6ICB4 259 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms