RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SCN1AP35498 2009 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 H3BNC9 293 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 PPEF2O14830 753 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 TRIM49P0CI25 452 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 TRIM49CP0CI26 452 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 KRT13P13646 458 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 RPL9P32969 192 aaKnown RBP15.14■□□□□ 0.01
USF1-209ENST00000529476 PPM1AP35813 382 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 CLDN10P78369 228 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 TFF2Q03403 129 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 BFSP1Q12934 665 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 DUOXA2Q1HG44 320 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 CCDC40Q4G0X9 1142 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 C1orf220Q5T0J3 134 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 C9orf57Q5W0N0 161 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 CD300LGQ6UXG3 332 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 C1orf127Q8N9H9 656 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 TMEM169Q96HH4 297 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 ANKRD36BP1Q96IX9 119 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 HCN4Q9Y3Q4 1203 aa15.14■□□□□ 0.01
USF1-209ENST00000529476 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.14■□□□□ 0.01
USF1-209ENST00000529476 CARNS1A5YM72 827 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 GRM6O15303 877 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 TADA2AO75478 443 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 B3GAT3O94766 335 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 FGFR1OPO95684 399 aaKnown RBP15.13■□□□□ 0.01
USF1-209ENST00000529476 TNNC2P02585 160 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 ITGB3P05106 788 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 KCNQ1P51787 676 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 PLCB3Q01970 1234 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 TPD52L1Q16890 204 aaPredicted RBP15.13■□□□□ 0.01
USF1-209ENST00000529476 DCLRE1AQ6PJP8 1040 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 ENOX1Q8TC92 643 aaKnown RBP15.13■□□□□ 0.01
USF1-209ENST00000529476 SPPL3Q8TCT6 385 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 VN1R3Q9BXE9 311 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 ARMCX3Q9UH62 379 aaPredicted RBP15.13■□□□□ 0.01
USF1-209ENST00000529476 SIX4Q9UIU6 781 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 ADAM28Q9UKQ2 775 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 ATG2AQ2TAZ0 1938 aa15.13■□□□□ 0.01
USF1-209ENST00000529476 CHD7Q9P2D1 2997 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 ANO9A1A5B4 782 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 TMEM189-UBE2V1I3L0A0 370 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 PIRO00625 290 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 LPXNO60711 386 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 CSPG5O95196 566 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 DNAJB1P25685 340 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 POLR2BP30876 1174 aaKnown RBP15.12■□□□□ 0.01
USF1-209ENST00000529476 BRCC3P46736 316 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 MCCD1P59942 119 aaPredicted RBP15.12■□□□□ 0.01
USF1-209ENST00000529476 KRT17Q04695 432 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 PPP3CAQ08209 521 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 DCAF17Q5H9S7 520 aaPredicted RBP15.12■□□□□ 0.01
USF1-209ENST00000529476 TRAPPC11Q7Z392 1133 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 FRMD5Q7Z6J6 570 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 USP37Q86T82 979 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 DDX53Q86TM3 631 aaKnown RBP15.12■□□□□ 0.01
USF1-209ENST00000529476 IRF2BP1Q8IU81 584 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 CXorf38Q8TB03 319 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 GPR62Q9BZJ7 368 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 THAP9Q9H5L6 903 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 MMRN2Q9H8L6 949 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 METTL14Q9HCE5 456 aaKnown RBP15.12■□□□□ 0.01
USF1-209ENST00000529476 ITGA11Q9UKX5 1188 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 AGAP1Q9UPQ3 857 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 NFE2L3Q9Y4A8 694 aa15.12■□□□□ 0.01
USF1-209ENST00000529476 I3L4J1 428 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 IKBKBO14920 756 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 GNA14O95837 355 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 EFEMP2O95967 443 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 C4BPAP04003 597 aaKnown RBP15.11■□□□□ 0.01
USF1-209ENST00000529476 KRT19P08727 400 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 GCLMP48507 274 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 AP3M2P53677 418 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 ENPEPQ07075 957 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 BIRC3Q13489 604 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 HSP90AA4PQ58FG1 418 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 TCERG1LQ5VWI1 586 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 TDRD10Q5VZ19 366 aaKnown RBP15.11■□□□□ 0.01
USF1-209ENST00000529476 FUT10Q6P4F1 479 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 TAS1R1Q7RTX1 841 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 CREBRFQ8IUR6 639 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 POF1BQ8WVV4 589 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 CNOT6LQ96LI5 555 aaKnown RBP15.11■□□□□ 0.01
USF1-209ENST00000529476 NAT10Q9H0A0 1025 aaKnown RBP15.11■□□□□ 0.01
USF1-209ENST00000529476 SAMSN1Q9NSI8 373 aaKnown RBP15.11■□□□□ 0.01
USF1-209ENST00000529476 LZTS1Q9Y250 596 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 NUB1Q9Y5A7 615 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 VWA8A3KMH1 1905 aa15.11■□□□□ 0.01
USF1-209ENST00000529476 SPTLC1O15269 473 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 PHACTR2O75167 634 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 CST3P01034 146 aaPredicted RBP15.1■□□□□ 0.01
USF1-209ENST00000529476 MARSP56192 900 aaKnown RBP15.1■□□□□ 0.01
USF1-209ENST00000529476 ERVFC1P60507 584 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 RBP5P82980 135 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 MYL5Q02045 173 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 UBE3AQ05086 875 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 CAMK1Q14012 370 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 TIGD5Q53EQ6 642 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 C15orf39Q6ZRI6 1047 aa15.1■□□□□ 0.01
USF1-209ENST00000529476 SV2AQ7L0J3 742 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms