RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SMYD5Q6GMV2 418 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 WDR93Q6P2C0 686 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 TMCO3Q6UWJ1 677 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 RUFY4Q6ZNE9 571 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 TRPV1Q8NER1 839 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 NIF3L1Q9GZT8 377 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 ASB7Q9H672 318 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 GTF3C4Q9UKN8 822 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 AMFRQ9UKV5 643 aa22.17■■□□□ 1.14
VPS28-209ENST00000528142 TARSL2A2RTX5 802 aaKnown RBP22.16■■□□□ 1.14
VPS28-209ENST00000528142 MYL3P08590 195 aa22.16■■□□□ 1.14
VPS28-209ENST00000528142 CYP2C9P11712 490 aa22.16■■□□□ 1.14
VPS28-209ENST00000528142 CDHR5Q9HBB8 845 aa22.16■■□□□ 1.14
VPS28-209ENST00000528142 RNF186Q9NXI6 227 aa22.16■■□□□ 1.14
VPS28-209ENST00000528142 SIX4Q9UIU6 781 aa22.16■■□□□ 1.14
VPS28-209ENST00000528142 AKR1A1P14550 325 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 FGFR4P22455 802 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 VSNL1P62760 191 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 LACTBP83111 547 aaPredicted RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 C11orf63Q6NUN7 778 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 CXorf38Q8TB03 319 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 HNRNPLLQ8WVV9 542 aaKnown RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 GCOM2Q9BZD3 368 aaPredicted RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 GABRQQ9UN88 632 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 TRPA1O75762 1119 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 HOXA11P31270 313 aaPredicted RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 PSMC4P43686 418 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 TMEM62Q0P6H9 643 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 FSCN1Q16658 493 aaKnown RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 JADE1Q6IE81 842 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 C1orf127Q8N9H9 656 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 ZNF653Q96CK0 615 aa22.15■■□□□ 1.14
VPS28-209ENST00000528142 RBM12Q9NTZ6 932 aaKnown RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 CHORDC1Q9UHD1 332 aaPredicted RBP22.15■■□□□ 1.14
VPS28-209ENST00000528142 DDX3YO15523 660 aaKnown RBP22.14■■□□□ 1.13
VPS28-209ENST00000528142 ATMINO43313 823 aaPredicted RBP22.14■■□□□ 1.13
VPS28-209ENST00000528142 GNA15P30679 374 aa22.14■■□□□ 1.13
VPS28-209ENST00000528142 ASPAP45381 313 aa22.14■■□□□ 1.13
VPS28-209ENST00000528142 FCGRTP55899 365 aa22.14■■□□□ 1.13
VPS28-209ENST00000528142 ZNF699Q32M78 642 aa22.14■■□□□ 1.13
VPS28-209ENST00000528142 ACTRT1Q8TDG2 376 aa22.14■■□□□ 1.13
VPS28-209ENST00000528142 RNF216Q9NWF9 866 aaPredicted RBP22.14■■□□□ 1.13
VPS28-209ENST00000528142 ALG6Q9Y672 507 aa22.14■■□□□ 1.13
VPS28-209ENST00000528142 THSD7BQ9C0I4 1608 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 DUSP11O75319 330 aaKnown RBP22.13■■□□□ 1.13
VPS28-209ENST00000528142 SEC31AO94979 1220 aaKnown RBP22.13■■□□□ 1.13
VPS28-209ENST00000528142 CLSTN1O94985 981 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 CFHP08603 1231 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 HOXC8P31273 242 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 PURAQ00577 322 aaKnown RBP22.13■■□□□ 1.13
VPS28-209ENST00000528142 CENPCQ03188 943 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 TRIM72Q6ZMU5 477 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 MCOLN2Q8IZK6 566 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 RASGEF1CQ8N431 466 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 CYFIP2Q96F07 1278 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 ADPGKQ9BRR6 497 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 NUP85Q9BW27 656 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 KATNAL1Q9BW62 490 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 CCDC94Q9BW85 323 aaPredicted RBP22.13■■□□□ 1.13
VPS28-209ENST00000528142 CISHQ9NSE2 258 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 UVRAGQ9P2Y5 699 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 CYBAP13498 195 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 DARSP14868 501 aaKnown RBP22.13■■□□□ 1.13
VPS28-209ENST00000528142 MAP2K2P36507 400 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 GRM5P41594 1212 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 PCBP1Q15365 356 aaKnown RBP eCLIP22.13■■□□□ 1.13
VPS28-209ENST00000528142 REM2Q8IYK8 340 aaPredicted RBP22.13■■□□□ 1.13
VPS28-209ENST00000528142 USP38Q8NB14 1042 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 ACAP3Q96P50 834 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 SELENOOQ9BVL4 669 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 CFHR5Q9BXR6 569 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 ARFGAP3Q9NP61 516 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 TMEM59LQ9UK28 342 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 GINS2Q9Y248 185 aa22.13■■□□□ 1.13
VPS28-209ENST00000528142 MROH7Q68CQ1 1323 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 TREHO43280 583 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 ZNF200P98182 395 aaPredicted RBP22.12■■□□□ 1.13
VPS28-209ENST00000528142 DCAF4L1Q3SXM0 396 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 NAA35Q5VZE5 725 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 ZNF564Q8TBZ8 553 aaPredicted RBP22.12■■□□□ 1.13
VPS28-209ENST00000528142 DNAJB3Q8WWF6 145 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 CPA5Q8WXQ8 436 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 TRIB2Q92519 343 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 FAXDC2Q96IV6 333 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 RPS6KC1Q96S38 1066 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 OSMRQ99650 979 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 LRRC1Q9BTT6 524 aa22.12■■□□□ 1.13
VPS28-209ENST00000528142 CNOT8Q9UFF9 292 aaKnown RBP22.12■■□□□ 1.13
VPS28-209ENST00000528142 ANK1P16157 1881 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 MYADML2A6NDP7 307 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 CEP104O60308 925 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 NOMO3P69849 1222 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 BEND6Q5SZJ8 279 aaPredicted RBP22.11■■□□□ 1.13
VPS28-209ENST00000528142 TMEM130Q8N3G9 435 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 ZNF606Q8WXB4 792 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 AVENQ9NQS1 362 aaPredicted RBP22.11■■□□□ 1.13
VPS28-209ENST00000528142 FAM53CQ9NYF3 392 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 C2CD2Q9Y426 696 aa22.11■■□□□ 1.13
VPS28-209ENST00000528142 THAP12O43422 761 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 KRT19P08727 400 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms