RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CEP295NLQ96MC4 621 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 PRICKLE1Q96MT3 831 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 TTC1Q99614 292 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CHP1Q99653 195 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 OLFM1Q99784 485 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 CTRCQ99895 268 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 HAUS8Q9BT25 410 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TBC1D10AQ9BXI6 508 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TRIM55Q9BYV6 548 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 IFIH1Q9BYX4 1025 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 IMPG2Q9BZV3 1241 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SLC12A5Q9H2X9 1139 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 DENND2DQ9H6A0 471 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 USP29Q9HBJ7 922 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 PALMDQ9NP74 551 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 NLRC4Q9NPP4 1024 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SAR1AQ9NR31 198 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 ECHDC1Q9NTX5 307 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TCP11L1Q9NUJ3 509 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TYW1Q9NV66 732 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 CXXC1Q9P0U4 656 aaPredicted RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 KLHL3Q9UH77 587 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TRIM33Q9UPN9 1127 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TDRKHQ9Y2W6 561 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 CD2APQ9Y5K6 639 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 COMMD10Q9Y6G5 202 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.16□□□□□ -1.42
CD44-225ENST00000527326 MAP3K19Q56UN5 1328 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 TNRQ92752 1358 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 KAT6BQ8WYB5 2073 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 SRCAPQ6ZRS2 3230 aa6.16□□□□□ -1.42
CD44-225ENST00000527326 A0A1W2PQJ5 194 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ESYT3A0FGR9 886 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 SMIM23A6NLE4 172 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 SYCE1LA8MT33 242 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 C1QTNF9BB2RNN3 333 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 F8W8V4 182 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 CCDC188H7C350 402 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 EML1O00423 815 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 CAPN9O14815 690 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 HAT1O14929 419 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 MCF2LO15068 1137 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 VILLO15195 856 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 MAPK13O15264 365 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 PJA2O43164 708 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 RAD51CO43502 376 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 DKC1O60832 514 aaKnown RBP eCLIP6.15□□□□□ -1.42
CD44-225ENST00000527326 TRMUO75648 421 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 FKBP9O95302 570 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 LDHCP07864 332 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 FURINP09958 794 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 OCM2P0CE71 109 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 OCMP0CE72 109 aaPredicted RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 PABPC1P11940 636 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 MYL6BP14649 208 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 M6PRP20645 277 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 CDH3P22223 829 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ALAS2P22557 587 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ECHS1P30084 290 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 TUFMP49411 452 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 VPS41P49754 854 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 HNRNPFP52597 415 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 YARSP54577 528 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 GRIN1Q05586 938 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 PPARAQ07869 468 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 NMIQ13287 307 aaPredicted RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 ZNF211Q13398 564 aaPredicted RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 KRT31Q15323 416 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 HERC4Q5GLZ8 1057 aaPredicted RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 SH3PXD2AQ5TCZ1 1133 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 SPOPLQ6IQ16 392 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 GGT6Q6P531 493 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 CCDC62Q6P9F0 684 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 TUBA3EQ6PEY2 450 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 KLHDC10Q6PID8 442 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 LVRNQ6Q4G3 990 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 RBM44Q6ZP01 1051 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 CAPN12Q6ZSI9 719 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 MIER3Q7Z3K6 550 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 SYT9Q86SS6 491 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ITIH5Q86UX2 942 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 SATL1Q86VE3 508 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 NPAS4Q8IUM7 802 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 LURAP1LQ8IV03 231 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ERI1Q8IV48 349 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 TNIP2Q8NFZ5 429 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 LILRB1Q8NHL6 650 aaPredicted RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 BORCS5Q969J3 196 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 VMP1Q96GC9 406 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 TCEANC2Q96MN5 208 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 NOX5Q96PH1 765 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 KRT12Q99456 494 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 MRPS26Q9BYN8 205 aaKnown RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 AGXT2Q9BYV1 514 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 LACRTQ9GZZ8 138 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 ADAM7Q9H2U9 754 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 C10orf88Q9H8K7 445 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 PSTPIP2Q9H939 334 aa6.15□□□□□ -1.42
CD44-225ENST00000527326 NHEJ1Q9H9Q4 299 aaPredicted RBP6.15□□□□□ -1.42
CD44-225ENST00000527326 SLC38A10Q9HBR0 1119 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms