RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	WRAP73	Q9P2S5	460 aa	Predicted RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	10.88	□□□□□ -0.67	7e-6	■■■■■ 27.7
SPIDR-225	ENST00000524141	COQ4	Q9Y3A0	265 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	KLHL33	A6NCF5	533 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	NVL	O15381	856 aa	Known RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	RALA	P11233	206 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	CETN2	P41208	172 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	ROR2	Q01974	943 aa	Known RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	ENOSF1	Q7L5Y1	443 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	GSTA5	Q7RTV2	222 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	USP37	Q86T82	979 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	PARD3B	Q8TEW8	1205 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	UNC45A	Q9H3U1	944 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	DENND2D	Q9H6A0	471 aa	Predicted RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	ACP6	Q9NPH0	428 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	PI4KB	Q9UBF8	816 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	SLC24A2	Q9UI40	661 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	R3HDM2	Q9Y2K5	976 aa	Known RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	LRCH1	Q9Y2L9	728 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	AHDC1	Q5TGY3	1603 aa	Predicted RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	LTBP1	Q14766	1721 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	CCDC22	O60826	627 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	CBX6	O95503	412 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	PDHA1	P08559	390 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	SKI	P12755	728 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	KLRC2	P26717	231 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	CCDC6	Q16204	474 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	P3H1	Q32P28	736 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	TAF1B	Q53T94	588 aa	Predicted RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	TRAPPC3L	Q5T215	181 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	MAEA	Q7L5Y9	396 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	NLRP9	Q7RTR0	991 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	RHOT1	Q8IXI2	618 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	MCOLN2	Q8IZK6	566 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	HELQ	Q8TDG4	1101 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	SPOCK2	Q92563	424 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	ST6GALNAC4	Q9H4F1	302 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	TMEM8A	Q9HCN3	771 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	SAYSD1	Q9NPB0	183 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	CCNL1	Q9UK58	526 aa	Predicted RBP	10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	ASB3	Q9Y575	518 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141	SIPA1L1	O43166	1804 aa		10.88	□□□□□ -0.67
SPIDR-225	ENST00000524141		H0Y3Z8	333 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	GRIN3B	O60391	1043 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ENTPD5	O75356	428 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	PROSC	O94903	275 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	GSTA2	P09210	222 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	PLS3	P13797	630 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	GCA	P28676	217 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	RPA3	P35244	121 aa	Predicted RBP	10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	BIRC2	Q13490	618 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	RBM26	Q5T8P6	1007 aa	Known RBP	10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	TMEM154	Q6P9G4	183 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	C4orf50	Q6ZRC1	276 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	CLNK	Q7Z7G1	428 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ZNF677	Q86XU0	584 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	KATNAL2	Q8IYT4	538 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	CERS5	Q8N5B7	392 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	FBXL13	Q8NEE6	735 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	PLEKHO2	Q8TD55	490 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	HERPUD2	Q9BSE4	406 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	OSBPL8	Q9BZF1	889 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	CYLD	Q9NQC7	956 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	LRRC37A	A6NMS7	1700 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ANKRD33B	A6NCL7	494 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	TISP43	B9A030	160 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	POC1B-GALNT4	F8VUJ3	575 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ATP2A1	O14983	1001 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	CFB	P00751	764 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	POLR2M	P0CAP2	368 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	GTF2B	Q00403	316 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	OCRL	Q01968	901 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	NFIA	Q12857	509 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	SNRNP35	Q16560	246 aa	Known RBP	10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	THEMIS2	Q5TEJ8	643 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	PCNX4	Q63HM2	1172 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	APOBEC3H	Q6NTF7	200 aa	Known RBP	10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	B3GNT9	Q6UX72	402 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	SIAH1	Q8IUQ4	282 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	EXD1	Q8NHP7	514 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ZFAND2B	Q8WV99	257 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	TEKT4	Q8WW24	435 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ZNF333	Q96JL9	665 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	RIT2	Q99578	217 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	TIPIN	Q9BVW5	301 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	HEMGN	Q9BXL5	484 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ETAA1	Q9NY74	926 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	ANKFY1	Q9P2R3	1169 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	SCOC	Q9UIL1	159 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	EXOC7	Q9UPT5	735 aa		10.87	□□□□□ -0.67
SPIDR-225	ENST00000524141	BTAF1	O14981	1849 aa		10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	IPO5	O00410	1097 aa	Known RBP	10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	DNALI1	O14645	258 aa	Predicted RBP	10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	TYROBP	O43914	113 aa		10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	ZBED4	O75132	1171 aa		10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	UNG	P13051	313 aa	Predicted RBP	10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	GTF2H1	P32780	548 aa		10.86	□□□□□ -0.67
SPIDR-225	ENST00000524141	SCNN1D	P51172	638 aa		10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms