RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SNAPC2Q13487 334 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 ANO5Q75V66 913 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 LRGUKQ96M69 825 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 AGXT2Q9BYV1 514 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 PABPC3Q9H361 631 aaKnown RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 ANLNQ9NQW6 1124 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 IL17RBQ9NRM6 502 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 LRCH1Q9Y2L9 728 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SMIM22K7EJ46 135 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SLC16A3O15427 465 aaKnown RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 CALB1P05937 261 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 FMO5P49326 533 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SLC29A2Q14542 456 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 PKN1Q16512 942 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 CCDC137Q6PK04 289 aaKnown RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 RFX8Q6ZV50 586 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SLC30A5Q8TAD4 765 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SEPT1Q8WYJ6 367 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 CENPTQ96BT3 561 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 AGPAT1Q99943 283 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 CELF4Q9BZC1 486 aaKnown RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 ZSCAN5CA6NGD5 496 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 TJP3O95049 919 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 COPB2P35606 906 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 GCLCP48506 637 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 RIPK1Q13546 671 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SNRNP35Q16560 246 aaKnown RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 DUOXA2Q1HG44 320 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 WASHC2DQ5SRD0 308 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 CXCL9Q07325 125 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 ZCWPW2Q504Y3 356 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 C16orf87Q6PH81 154 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 MYLK4Q86YV6 388 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 NDUFA13Q9P0J0 144 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 PPARGC1AQ9UBK2 798 aaKnown RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 SLC12A6Q9UHW9 1150 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 MT-ND3P03897 115 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 UCHL3P15374 230 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 WDR72Q3MJ13 1102 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 VGLL2Q8N8G2 317 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 MCUQ8NE86 351 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 STK32AQ8WU08 396 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 RUSC1Q9BVN2 902 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 KLHL33A6NCF5 533 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 RSPH10B2B2RC85 870 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 F8VZ95 297 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 MED24O75448 989 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 RSPH10BP0C881 870 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 SRGAP2BP0DMP2 458 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 KLRC1P26715 233 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 SKA2Q8WVK7 121 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 ANKS1AQ92625 1134 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 ERP44Q9BS26 406 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 HAUS8Q9BT25 410 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 SAYSD1Q9NPB0 183 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 DDX4Q9NQI0 724 aaKnown RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 HAO1Q9UJM8 370 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 PIN4Q9Y237 131 aaKnown RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 A8MXQ7 604 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 CYP2B6P20813 491 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 DSG1Q02413 1049 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 LBHD1Q9BQE6 289 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 APEX2Q9UBZ4 518 aa13.84□□□□□ -0.19
TCOF1-213ENST00000514442 CPSF3Q9UKF6 684 aaKnown RBP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.84□□□□□ -0.19
TCOF1-213ENST00000514442 DNAJC6O75061 913 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 CTSHP09668 335 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 CALB2P22676 271 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 ZNF157P51786 506 aaPredicted RBP13.83□□□□□ -0.19
TCOF1-213ENST00000514442 EFNA5P52803 228 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 MDM2Q00987 491 aaPredicted RBP13.83□□□□□ -0.19
TCOF1-213ENST00000514442 TKFCQ3LXA3 575 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 KRT80Q6KB66 452 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 ZNF483Q8TF39 744 aaPredicted RBP13.83□□□□□ -0.19
TCOF1-213ENST00000514442 EZH1Q92800 747 aaPredicted RBP13.83□□□□□ -0.19
TCOF1-213ENST00000514442 AKT1S1Q96B36 256 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 FAF2Q96CS3 445 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 RBM41Q96IZ5 413 aaKnown RBP13.83□□□□□ -0.19
TCOF1-213ENST00000514442 TRAIPQ9BWF2 469 aa13.83□□□□□ -0.19
TCOF1-213ENST00000514442 ICAM1P05362 532 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 ZCCHC18P0CG32 403 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 DRD4P21917 467 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 EARS2Q5JPH6 523 aaKnown RBP13.83□□□□□ -0.2
TCOF1-213ENST00000514442 HP1BP3Q5SSJ5 553 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-213ENST00000514442 PYROXD1Q8WU10 500 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 RIT2Q99578 217 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 KLHL11Q9NVR0 708 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 GRIN2DO15399 1336 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 CCL15-CCL14A0A0B4J2E2 113 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 ARHGEF37A1IGU5 675 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 TYW5A2RUC4 315 aaKnown RBP13.83□□□□□ -0.2
TCOF1-213ENST00000514442 ABLIM1O14639 778 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 RPS6KA2Q15349 733 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 CCL15Q16663 113 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 ARL13BQ3SXY8 428 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 MMEL1Q495T6 779 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 FIGNQ5HY92 759 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 MFSD14CQ5VZR4 134 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 MAB21L3Q8N8X9 362 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 RFFLQ8WZ73 363 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms