RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 MEIS3P2A8K0S8 358 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 PMM2O15305 246 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 PNPLA4P41247 253 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 GCLMP48507 274 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 UBASH3AP57075 661 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 UBXN1Q04323 297 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 TUSC3Q13454 348 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 KRT31Q15323 416 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 ZBTB6Q15916 424 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 SGSM1Q2NKQ1 1148 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 CLLU1OSQ5K130 101 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 DCLRE1AQ6PJP8 1040 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 TRAPPC11Q7Z392 1133 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 CMTR2Q8IYT2 770 aaKnown RBP10.95□□□□□ -0.66
NEDD9-214ENST00000513989 LRRC43Q8N309 656 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 PPP1R10Q96QC0 940 aaKnown RBP10.95□□□□□ -0.66
NEDD9-214ENST00000513989 COLEC11Q9BWP8 271 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 VPS16Q9H269 839 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 MMRN2Q9H8L6 949 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 TBC1D13Q9NVG8 400 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 TAB2Q9NYJ8 693 aa10.95□□□□□ -0.66
NEDD9-214ENST00000513989 ARHGEF37A1IGU5 675 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 PTGESO14684 152 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 TRAPPC3O43617 180 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 CLSTN1O94985 981 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 NFICP08651 508 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 KRT19P08727 400 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 TRIM49P0CI25 452 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 TRIM49CP0CI26 452 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 ATP1A3P13637 1013 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 P4HA1P13674 534 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 ATICP31939 592 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 FMO5P49326 533 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 MXI1P50539 228 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 COPB1P53618 953 aaKnown RBP10.94□□□□□ -0.66
NEDD9-214ENST00000513989 ERVK-21P61565 698 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 DLG4P78352 724 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 FANCCQ00597 558 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 PAN2Q504Q3 1202 aaKnown RBP10.94□□□□□ -0.66
NEDD9-214ENST00000513989 GLRA4Q5JXX5 417 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 GBP6Q6ZN66 633 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 SV2AQ7L0J3 742 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 GAS2L3Q86XJ1 694 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 FIBCD1Q8N539 461 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 GSTCDQ8NEC7 633 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 FBXL13Q8NEE6 735 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 SP7Q8TDD2 431 aaPredicted RBP10.94□□□□□ -0.66
NEDD9-214ENST00000513989 ANP32BQ92688 251 aaKnown RBP10.94□□□□□ -0.66
NEDD9-214ENST00000513989 TAF4BQ92750 862 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 SLC35C1Q96A29 364 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 ZNF689Q96CS4 500 aaPredicted RBP10.94□□□□□ -0.66
NEDD9-214ENST00000513989 ZMAT2Q96NC0 199 aaKnown RBP10.94□□□□□ -0.66
NEDD9-214ENST00000513989 TMEM175Q9BSA9 504 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 RAB20Q9NX57 234 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 MIOSQ9NXC5 875 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 STK39Q9UEW8 545 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 MTUS1Q9ULD2 1270 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 AGAP1Q9UPQ3 857 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 FAN1Q9Y2M0 1017 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 RWDD3Q9Y3V2 267 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 PCDHB12Q9Y5F1 795 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 WDFY4Q6ZS81 3184 aa10.94□□□□□ -0.66
NEDD9-214ENST00000513989 GTPBP10A4D1E9 387 aaKnown RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 TADA2AO75478 443 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 C4BPAP04003 597 aaKnown RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 LAG3P18627 525 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 COL9A1P20849 921 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 LRPAP1P30533 357 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 PIK3CAP42336 1068 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 OR1G1P47890 313 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 HTRA4P83105 476 aaPredicted RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 MYL7Q01449 175 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 PPP3CAQ08209 521 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 NCOA4Q13772 614 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 SKIV2LQ15477 1246 aaKnown RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 EXOC3L4Q17RC7 722 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 ZACNQ401N2 412 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 LMBRD2Q68DH5 695 aaPredicted RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 EFCAB13Q8IY85 973 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 EHBP1Q8NDI1 1231 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 OR5B17Q8NGF7 314 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 PLEKHO2Q8TD55 490 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 ZNF516Q92618 1163 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 KHSRPQ92945 711 aaKnown RBP eCLIP10.93□□□□□ -0.667e-7■□□□□ 10.6
NEDD9-214ENST00000513989 C18orf25Q96B23 403 aaPredicted RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 FAM81BQ96LP2 452 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 PCMTD1Q96MG8 357 aaPredicted RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 ZNF560Q96MR9 790 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 TRIM5Q9C035 493 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 MTMR12Q9C0I1 747 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 DNAI2Q9GZS0 605 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 HSD3B7Q9H2F3 369 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 RNF19AQ9NV58 838 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 NUB1Q9Y5A7 615 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 FNDC1Q4ZHG4 1894 aaPredicted RBP10.93□□□□□ -0.66
NEDD9-214ENST00000513989 PLXNA4Q9HCM2 1894 aa10.93□□□□□ -0.66
NEDD9-214ENST00000513989 A0A1B0GTH6 734 aa10.92□□□□□ -0.66
NEDD9-214ENST00000513989 CASTOR2A6NHX0 329 aa10.92□□□□□ -0.66
NEDD9-214ENST00000513989 LGALS16A8MUM7 142 aa10.92□□□□□ -0.66
NEDD9-214ENST00000513989 PODXLO00592 558 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms