RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 MXRA8Q9BRK3 442 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 CNOT7Q9UIV1 285 aaKnown RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 STXBP5LQ9Y2K9 1186 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 A0A1B0GVG6 124 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 MIF4GDA9UHW6 222 aaKnown RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 IRF6O14896 467 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 MAP3K7O43318 606 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 PLS3P13797 630 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 POLGP54098 1239 aaPredicted RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 SNX30Q5VWJ9 437 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 PADI6Q6TGC4 694 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 VSTM1Q6UX27 236 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 TRMT10CQ7L0Y3 403 aaKnown RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 MTDHQ86UE4 582 aaKnown RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 CPXCR1Q8N123 301 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 CCDC127Q96BQ5 260 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 HAUS1Q96CS2 278 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 TMEM39BQ9GZU3 492 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 A0A0A6YYK5 440 aaPredicted RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 FAM47DPA6NHR8 397 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ASNSP08243 561 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 CNGA1P29973 690 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 CACNA2D1P54289 1103 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ROR2Q01974 943 aaKnown RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 MPP2Q14168 576 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ISLR2Q6UXK2 745 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 MFN1Q8IWA4 741 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 BORCS6Q96GS4 357 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 MAGEB18Q96M61 343 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 SERPINB12Q96P63 405 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 APEX2Q9UBZ4 518 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ZMYM2Q9UBW7 1377 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 COL2A1P02458 1487 aaPredicted RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 SLX4Q8IY92 1834 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 KLHL33A6NCF5 533 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 KRT36O76013 467 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ETS2P15036 469 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ATP6V1C1P21283 382 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 SP100P23497 879 aaPredicted RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 MARK3P27448 753 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 CAP2P40123 477 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 BFSP1Q12934 665 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 CLUL1Q15846 466 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 C6orf163Q5TEZ5 329 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 FAM161BQ96MY7 647 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ROPN1BQ9BZX4 212 aaPredicted RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 TRABDQ9H4I3 376 aa10.23□□□□□ -0.77
VCAN-210ENST00000513960 ROPN1Q9HAT0 212 aaPredicted RBP10.23□□□□□ -0.77
VCAN-210ENST00000513960 PEX11AO75192 247 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 P4HBP07237 508 aaKnown RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 SSTR3P32745 418 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 USP4Q13107 963 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 SPDYE2Q495Y8 402 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 CBWD6Q4V339 395 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 CBWD3Q5JTY5 395 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 CBWD5Q5RIA9 395 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 RTKN2Q8IZC4 609 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 SNF8Q96H20 258 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 AGBL1Q96MI9 1066 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 DENND2DQ9H6A0 471 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 TMEM206Q9H813 350 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 KLHL11Q9NVR0 708 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 NMRK1Q9NWW6 199 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 WRAP73Q9P2S5 460 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 MAP3K13O43283 966 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 CDH16O75309 829 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 TPBGLP0DKB5 382 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 ALAS1P13196 640 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 ATF7P17544 494 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 VCAM1P19320 739 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 FOXN2P32314 431 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 VHLP40337 213 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 PIK3CAP42336 1068 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 MTFR1Q15390 333 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 IZUMO3Q5VZ72 239 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 RFWD3Q6PCD5 774 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 MCF2L2Q86YR7 1114 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 CCDC125Q86Z20 511 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 TTLL6Q8N841 843 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 HIPK4Q8NE63 616 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 SCG3Q8WXD2 468 aaKnown RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 ZNF277Q9NRM2 450 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 KCNH7Q9NS40 1196 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 CHST7Q9NS84 486 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 BRWD3Q6RI45 1802 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 GOLGA8IPA6NC78 632 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 GOLGA8JA6NMD2 632 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 PLA2G6O60733 806 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 ATP5HO75947 161 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 HAUS5O94927 633 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 FESP07332 822 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 ESRRAP11474 423 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 MAPK4P31152 587 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 PTGIRP43119 386 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 NPEPPSP55786 919 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 MKRN3Q13064 507 aaKnown RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 PDCD2Q16342 344 aaPredicted RBP10.22□□□□□ -0.77
VCAN-210ENST00000513960 C11orf91Q3C1V1 193 aa10.22□□□□□ -0.77
VCAN-210ENST00000513960 EPC2Q52LR7 807 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms