RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 DACH1Q9UI36 760 aa10.6□□□□□ -0.71
TOPBP1-209ENST00000513818 RWDD3Q9Y3V2 267 aa10.6□□□□□ -0.71
TOPBP1-209ENST00000513818 C2CD2Q9Y426 696 aa10.6□□□□□ -0.71
TOPBP1-209ENST00000513818 SCN1AP35498 2009 aa10.6□□□□□ -0.71
TOPBP1-209ENST00000513818 H3BNC9 293 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 C2CD2LO14523 706 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 TRIM66O15016 1216 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 SPTLC1O15269 473 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 TADA2AO75478 443 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 B3GAT3O94766 335 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 CLSTN1O94985 981 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 KRT19P08727 400 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 KRT13P13646 458 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 IGFBP4P22692 258 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 LRPAP1P30533 357 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 PPM1AP35813 382 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 VAMP7P51809 220 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 ERVFC1P60507 584 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 BFSP1Q12934 665 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 BIRC3Q13489 604 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 CAMK1Q14012 370 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 SKOR2Q2VWA4 1001 aaPredicted RBP10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 TCERG1LQ5VWI1 586 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 TDRD10Q5VZ19 366 aaKnown RBP10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 PLPP4Q5VZY2 271 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 C9orf57Q5W0N0 161 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 FUT10Q6P4F1 479 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 CREBRFQ8IUR6 639 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 WDR49Q8IV35 697 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 CD302Q8IX05 232 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 SPPL3Q8TCT6 385 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 PARD3BQ8TEW8 1205 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 RSPH1Q8WYR4 309 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 BORCS6Q96GS4 357 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 ANKRD36BP1Q96IX9 119 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 CNOT6LQ96LI5 555 aaKnown RBP10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 COLEC11Q9BWP8 271 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 PLVAPQ9BX97 442 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 GPR62Q9BZJ7 368 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 SIX4Q9UIU6 781 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 ADAM28Q9UKQ2 775 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 AGAP1Q9UPQ3 857 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 DERAQ9Y315 318 aa10.59□□□□□ -0.71
TOPBP1-209ENST00000513818 SLC16A3O15427 465 aaKnown RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 XPOTO43592 962 aaKnown RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 LRRN2O75325 713 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TNNC2P02585 160 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 RB1P06400 928 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 CYP3A5P20815 502 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TKTP29401 623 aaKnown RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 GCLMP48507 274 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 PLCB3Q01970 1234 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 PPP3CAQ08209 521 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 SURF1Q15526 300 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TPD52L1Q16890 204 aaPredicted RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TIGD5Q53EQ6 642 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 INTS8Q75QN2 995 aaKnown RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TRAPPC11Q7Z392 1133 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 ADGRD2Q7Z7M1 963 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 GPIHBP1Q8IV16 184 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 VPS52Q8N1B4 723 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 AOPEPQ8N6M6 819 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TMEM174Q8WUU8 243 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 CEP63Q96MT8 703 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 UROC1Q96N76 676 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 CDX2Q99626 313 aaPredicted RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TCF25Q9BQ70 676 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 MKNK1Q9BUB5 465 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 HERC2P3Q9BVR0 1158 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 ZBP1Q9H171 429 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 ENTPD7Q9NQZ7 604 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 SAMSN1Q9NSI8 373 aaKnown RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 NUB1Q9Y5A7 615 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 TIMM13Q9Y5L4 95 aaPredicted RBP10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 SF3B1O75533 1304 aaKnown RBP eCLIP10.58□□□□□ -0.727e-6■■■■■ 33.4
TOPBP1-209ENST00000513818 MYO9BQ13459 2157 aa10.58□□□□□ -0.72
TOPBP1-209ENST00000513818 ANO9A1A5B4 782 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 HIDE1A8MVS5 230 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 TMEM189-UBE2V1I3L0A0 370 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PIRO00625 290 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PHACTR2O75167 634 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 CCDC192P0DO97 292 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 ERCC5P28715 1186 aaPredicted RBP10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 RPL9P32969 192 aaKnown RBP10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PIK3CAP42336 1068 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 POU5F1Q01860 360 aaKnown RBP10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 DUOXA2Q1HG44 320 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 CBWD6Q4V339 395 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 CBWD3Q5JTY5 395 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 RTP2Q5QGT7 225 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 CBWD5Q5RIA9 395 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 FAM171A1Q5VUB5 890 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 DCLRE1AQ6PJP8 1040 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PRSS55Q6UWB4 352 aaPredicted RBP10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 CEP57Q86XR8 500 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 IRF2BP1Q8IU81 584 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 CXorf38Q8TB03 319 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 TMC2Q8TDI7 906 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 PI4K2AQ9BTU6 479 aa10.57□□□□□ -0.72
TOPBP1-209ENST00000513818 TLR9Q9NR96 1032 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms