RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 CXorf38Q8TB03 319 aa19.31■□□□□ 0.68
PDLIM7-208ENST00000493815 ARMCX3Q9UH62 379 aaPredicted RBP19.31■□□□□ 0.68
PDLIM7-208ENST00000493815 AGAP1Q9UPQ3 857 aa19.31■□□□□ 0.68
PDLIM7-208ENST00000493815 ANO9A1A5B4 782 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 PIRO00625 290 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 GCLMP48507 274 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 ERVFC1P60507 584 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 CLDN10P78369 228 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 TCERG1LQ5VWI1 586 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 FUT10Q6P4F1 479 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 IRF2BP1Q8IU81 584 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 VPS52Q8N1B4 723 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 AUTS2Q8WXX7 1259 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 ELMO3Q96BJ8 720 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 SAMSN1Q9NSI8 373 aaKnown RBP19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 NUB1Q9Y5A7 615 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 REV3LO60673 3130 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 PLXNA4Q9HCM2 1894 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 SPTLC1O15269 473 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 CST3P01034 146 aaPredicted RBP19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 IRS1P35568 1242 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 BIRC3Q13489 604 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 TDRD10Q5VZ19 366 aaKnown RBP19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 DDX53Q86TM3 631 aaKnown RBP19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 GUCD1Q96NT3 240 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 CDX2Q99626 313 aaPredicted RBP19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 PUF60Q9UHX1 559 aaKnown RBP19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 ITGA11Q9UKX5 1188 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 NFE2L3Q9Y4A8 694 aa19.3■□□□□ 0.68
PDLIM7-208ENST00000493815 IGFBP4P22692 258 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 LILRA4P59901 499 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 TIGD5Q53EQ6 642 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 CT47A1Q5JQC4 288 aaPredicted RBP19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 FAM171A1Q5VUB5 890 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 SV2AQ7L0J3 742 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 FRMD5Q7Z6J6 570 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 ENOX1Q8TC92 643 aaKnown RBP19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 MYLIPQ8WY64 445 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 CNOT6LQ96LI5 555 aaKnown RBP19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.29■□□□□ 0.681e-6■■■■■ 56
PDLIM7-208ENST00000493815 MTMR10Q9NXD2 777 aa19.29■□□□□ 0.68
PDLIM7-208ENST00000493815 SF3B1O75533 1304 aaKnown RBP eCLIP19.29■□□□□ 0.683e-7■■■■■ 40.8
PDLIM7-208ENST00000493815 COL4A4P53420 1690 aaPredicted RBP19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 TMEM189-UBE2V1I3L0A0 370 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 C2CD2LO14523 706 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 PHACTR2O75167 634 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 FGFR1OPO95684 399 aaKnown RBP19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 EFEMP2O95967 443 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 C4BPAP04003 597 aaKnown RBP19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 USP37Q86T82 979 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 CEP57Q86XR8 500 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 AOPEPQ8N6M6 819 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 MICAL1Q8TDZ2 1067 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 SLC35C1Q96A29 364 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 TCF25Q9BQ70 676 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 TLR9Q9NR96 1032 aa19.28■□□□□ 0.68
PDLIM7-208ENST00000493815 CARNS1A5YM72 827 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 IKBKBO14920 756 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 VNN1O95497 513 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 CA8P35219 290 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 RBP5P82980 135 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 PLPP4Q5VZY2 271 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 TMC7Q7Z402 723 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 RNF168Q8IYW5 571 aaPredicted RBP19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 THAP9Q9H5L6 903 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 METTL14Q9HCE5 456 aaKnown RBP19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 ENTPD7Q9NQZ7 604 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 FANCLQ9NW38 375 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 LZTS1Q9Y250 596 aa19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.27■□□□□ 0.68
PDLIM7-208ENST00000493815 LRRN2O75325 713 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 GNA14O95837 355 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 SOD2P04179 222 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 TKTP29401 623 aaKnown RBP19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 MYL6P60660 151 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 MYL5Q02045 173 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 UBE3AQ05086 875 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 ZACNQ401N2 412 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 CBWD6Q4V339 395 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 CBWD3Q5JTY5 395 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 RTP2Q5QGT7 225 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 CBWD5Q5RIA9 395 aa19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 NAT10Q9H0A0 1025 aaKnown RBP19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 TIMM13Q9Y5L4 95 aaPredicted RBP19.27■□□□□ 0.67
PDLIM7-208ENST00000493815 MYO7AQ13402 2215 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 HIDE1A8MVS5 230 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 TAF6P49848 677 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 ZNF165P49910 485 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 MCCD1P59942 119 aaPredicted RBP19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 TRPC3Q13507 836 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 NCOA4Q13772 614 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 NCAPHQ15003 741 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 C15orf39Q6ZRI6 1047 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 TRIM59Q8IWR1 403 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 TAS1R2Q8TE23 839 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 MRPL38Q96DV4 380 aaKnown RBP19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 HPDLQ96IR7 371 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 ZBP1Q9H171 429 aa19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 R3HCC1Q9Y3T6 440 aaKnown RBP19.26■□□□□ 0.67
PDLIM7-208ENST00000493815 SCN1AP35498 2009 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms