RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRKAG2Q9UGJ0 569 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 E5RI56 91 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 APOBEC3FQ8IUX4 373 aaKnown RBP17.28■□□□□ 0.36
COL7A1-210ENST00000487017 OR6P1Q8NGX9 317 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 CLMNQ96JQ2 1002 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 PRR12Q9ULL5 1215 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 MTO1Q9Y2Z2 717 aaKnown RBP17.28■□□□□ 0.36
COL7A1-210ENST00000487017 SMAPO00193 183 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 SPAG6O75602 509 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 ESRRBO95718 433 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 DDIASQ8IXT1 998 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 TMEM143Q96AN5 459 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 CARD9Q9H257 536 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 IL10P22301 178 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 ZNF677Q86XU0 584 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 TNIP3Q96KP6 325 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 PRLRP16471 622 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 CRAMP1Q96RY5 1269 aa17.28■□□□□ 0.36
COL7A1-210ENST00000487017 KDM6AO15550 1401 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-210ENST00000487017 KCNJ1P48048 391 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 GJB7Q6PEY0 223 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 COL23A1Q86Y22 540 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-210ENST00000487017 TRIM62Q9BVG3 475 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 SARS2Q9NP81 518 aaKnown RBP17.27■□□□□ 0.36
COL7A1-210ENST00000487017 TMEM247A6NEH6 219 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 AP3B1O00203 1094 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 ZBTB22O15209 634 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 NTSR2O95665 410 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 SULT1E1P49888 294 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 CATSPER3Q86XQ3 398 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 TEX9Q8N6V9 391 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 GCNAQ96QF7 691 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 USP32Q8NFA0 1604 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 KLC1Q07866 573 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 PAPD7Q5XG87 772 aaKnown RBP17.27■□□□□ 0.36
COL7A1-210ENST00000487017 CDC42EP5Q6NZY7 148 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 KCNV1Q6PIU1 500 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 C3orf20Q8ND61 904 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 SIK2Q9H0K1 926 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 CHMP2BQ9UQN3 213 aa17.27■□□□□ 0.36
COL7A1-210ENST00000487017 DFFAO00273 331 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 CDK17Q00537 523 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 FAM118BQ9BPY3 351 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 CCDC90BQ9GZT6 254 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 TPI1P60174 286 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 KCNA1Q09470 495 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 GRB10Q13322 594 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 MKRN4PQ13434 485 aaPredicted RBP17.27■□□□□ 0.35
COL7A1-210ENST00000487017 LVRNQ6Q4G3 990 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 KIF2BQ8N4N8 673 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 PPHLN1Q8NEY8 458 aaKnown RBP17.27■□□□□ 0.35
COL7A1-210ENST00000487017 AGAP1Q9UPQ3 857 aa17.27■□□□□ 0.35
COL7A1-210ENST00000487017 AP5Z1O43299 807 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 MOCS2O96007 188 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 HLA-DRAP01903 254 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 MED21Q13503 144 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 CNGA3Q16281 694 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 STRIP1Q5VSL9 837 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 C3orf62Q6ZUJ4 267 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 SERPINB12Q96P63 405 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 RIT2Q99578 217 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 EPAS1Q99814 870 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 PCMTD2Q9NV79 361 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 STX18Q9P2W9 335 aaKnown RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 TSR3Q9UJK0 312 aaKnown RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 FNTAP49354 379 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 MXD4Q14582 209 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 HHIPL2Q6UWX4 724 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 PBXIP1Q96AQ6 731 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 PLEKHA5Q9HAU0 1116 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 TOB1P50616 345 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 FIGNQ5HY92 759 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 PAK5Q9P286 719 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 MARCOQ9UEW3 520 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 NAGPAQ9UK23 515 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 ITM2BQ9Y287 266 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 COPB2P35606 906 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 TRADDQ15628 312 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 LPAR1Q92633 364 aa17.26■□□□□ 0.35
COL7A1-210ENST00000487017 MMTAG2Q9BU76 263 aaKnown RBP17.26■□□□□ 0.35
COL7A1-210ENST00000487017 UBA6A0AVT1 1052 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 LRRIQ3A6PVS8 624 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 IGF2BP3O00425 579 aaKnown RBP eCLIP17.25■□□□□ 0.35
COL7A1-210ENST00000487017 WEE2P0C1S8 567 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 KRT4P19013 534 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 HDAC4P56524 1084 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 RBP5P82980 135 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 EMC2Q15006 297 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 TBCCQ15814 346 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 RBBP7Q16576 425 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 MDM1Q8TC05 714 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 MXRA8Q9BRK3 442 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 THAP2Q9H0W7 228 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 UNC45AQ9H3U1 944 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 UBE2Q2LH0YL09 131 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 ENTPD3O75355 529 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 ERFP50548 548 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 HSD17B4P51659 736 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 MTMR2Q13614 643 aa17.25■□□□□ 0.35
COL7A1-210ENST00000487017 SLC13A5Q86YT5 568 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms