RNA–Protein interactions for RNA: ENST00000483122.1

VTI1A-205, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 4

Gene VTI1A, Length 2,423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-205	ENST00000483122	EYA3	Q99504	573 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	FAM118B	Q9BPY3	351 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	ECSIT	Q9BQ95	431 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	NUP85	Q9BW27	656 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	MINPP1	Q9UNW1	487 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	SNED1	Q8TER0	1413 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	MYO3B	Q8WXR4	1341 aa		12.52	□□□□□ -0.41
VTI1A-205	ENST00000483122	ATP6V1G1	O75348	118 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	NTSR2	O95665	410 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	PSMC2	P35998	433 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	MAGEA4	P43358	317 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	BMT2	Q1RMZ1	405 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	CAPN12	Q6ZSI9	719 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	CATSPER3	Q86XQ3	398 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	RIBC1	Q8N443	379 aa	Predicted RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ZNF564	Q8TBZ8	553 aa	Predicted RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	CEP95	Q96GE4	821 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	HIC2	Q96JB3	615 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	SMC6	Q96SB8	1091 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ZNF510	Q9Y2H8	683 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	R3HDM2	Q9Y2K5	976 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	TYROBP	O43914	113 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ZBED4	O75132	1171 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	USP1	O94782	785 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ASL	P04424	464 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	SETSIP	P0DME0	302 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ANPEP	P15144	967 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	SERPINB3	P29508	390 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	CPA2	P48052	419 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	CLK2	P49760	499 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	DSG1	Q02413	1049 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	CAV1	Q03135	178 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	IZUMO3	Q5VZ72	239 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	DZIP1	Q86YF9	867 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	MAPKAPK5	Q8IW41	473 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	STKLD1	Q8NE28	680 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	SLC5A5	Q92911	643 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	FNBP1	Q96RU3	617 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	DCLK3	Q9C098	648 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	C12orf65	Q9H3J6	166 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ANKFY1	Q9P2R3	1169 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	ANGPTL2	Q9UKU9	493 aa		12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	SMG5	Q9UPR3	1016 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-205	ENST00000483122	PPP1R11	O60927	126 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	OR6B1	O95007	311 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	TROVE2	P10155	538 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	VAV1	P15498	845 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ADRA2B	P18089	450 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	SMARCA1	P28370	1054 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	PGM1	P36871	562 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	TMEM62	Q0P6H9	643 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	NR1H3	Q13133	447 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	TTLL12	Q14166	644 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	CEP128	Q6ZU80	1094 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	TTC7B	Q86TV6	843 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	SPATA24	Q86W54	205 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MYLK4	Q86YV6	388 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	SYT2	Q8N9I0	419 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MORC4	Q8TE76	937 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	FAM161B	Q96MY7	647 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MAK16	Q9BXY0	300 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	GPCPD1	Q9NPB8	672 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ACP6	Q9NPH0	428 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	C2orf71	A6NGG8	1288 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MTA2	O94776	668 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ITGA2B	P08514	1039 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ESRRA	P11474	423 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ADRA1D	P25100	572 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	NMT1	P30419	496 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MAGEA10	P43363	369 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	CDK8	P49336	464 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MYL7	Q01449	175 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	CDC16	Q13042	620 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	CFAP157	Q5JU67	520 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ZNF804A	Q7Z570	1209 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	PHLDB2	Q86SQ0	1253 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ARHGEF19	Q8IW93	802 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ZNF398	Q8TD17	642 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	NMD3	Q96D46	503 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	MPP4	Q96JB8	637 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	OLFM3	Q96PB7	478 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	RBM15	Q96T37	977 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	CYTH2	Q99418	400 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	CCDC28B	Q9BUN5	200 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	EBF3	Q9H4W6	596 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	ALG13	Q9NP73	1137 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	SAYSD1	Q9NPB0	183 aa		12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	UBE2T	Q9NPD8	197 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-205	ENST00000483122	hCG_1984214	I3L0E3	225 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	PFDN1	O60925	122 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	SGPL1	O95470	568 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	GAS8	O95995	478 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	ABHD2	P08910	425 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	PABPC4L	P0CB38	370 aa	Known RBP	12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	PLS3	P13797	630 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	CYP2J2	P51589	502 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	SLC18A1	P54219	525 aa		12.49	□□□□□ -0.41
VTI1A-205	ENST00000483122	FASTKD3	Q14CZ7	662 aa	Known RBP	12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms