RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GPR52Q9Y2T5 361 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 SH3D21A4FU49 640 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 C9orf118A6NHY6 69 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 AREL1O15033 823 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 PJA2O43164 708 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 TBC1D4O60343 1298 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SKAP2O75563 359 aaPredicted RBP6.18□□□□□ -1.42
UPF3B-203ENST00000478840 MT-ND5P03915 603 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 GNAI3P08754 354 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SBK3P0C264 359 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF888P0CJ79 500 aaPredicted RBP6.18□□□□□ -1.42
UPF3B-203ENST00000478840 GZMKP49863 264 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 GNAI1P63096 354 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 ATP2C1P98194 919 aaPredicted RBP6.18□□□□□ -1.42
UPF3B-203ENST00000478840 CREMQ03060 361 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 PTH1RQ03431 593 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 FOXO1Q12778 655 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SLC13A2Q13183 592 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 MFSD14BQ5SR56 506 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 CMTM4Q8IZR5 234 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 FBXO18Q8NFZ0 1043 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 TNPO1Q92973 898 aaKnown RBP6.18□□□□□ -1.42
UPF3B-203ENST00000478840 GCC1Q96CN9 775 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 CEP95Q96GE4 821 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SIGLEC10Q96LC7 697 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SPATA25Q9BR10 227 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 TMEM168Q9H0V1 697 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 BARX1Q9HBU1 254 aaPredicted RBP6.18□□□□□ -1.42
UPF3B-203ENST00000478840 TM7SF3Q9NS93 570 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SAGE1Q9NXZ1 904 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 JKAMPQ9P055 326 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 NTMQ9P121 344 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 CFAP97Q9P2B7 532 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 SRRDQ9UH36 339 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 FAM184BQ9ULE4 1060 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 CEP83Q9Y592 693 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 ZMYM3Q14202 1370 aa6.18□□□□□ -1.42
UPF3B-203ENST00000478840 MBD3L4A6NDZ8 208 aaPredicted RBP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 MBD3L3A6NE82 208 aaPredicted RBP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 THAP12O43422 761 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 CASRP41180 1078 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 APBA1Q02410 837 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 GALNT1Q10472 559 aaPredicted RBP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 PPFIA1Q13136 1202 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 RAB32Q13637 225 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 TBR1Q16650 682 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 ZACNQ401N2 412 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 VWA3BQ502W6 1294 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 SLC44A4Q53GD3 710 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 FAM26FQ5R3K3 315 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 SDR16C5Q8N3Y7 309 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 ANKRD53Q8N9V6 530 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 FBXO15Q8NCQ5 510 aaPredicted RBP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 RABGGTAQ92696 567 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF566Q969W8 418 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 GPHA2Q96T91 129 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 NDC1Q9BTX1 674 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 TMEM120AQ9BXJ8 343 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 KCNK12Q9HB15 430 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 GPR35Q9HC97 309 aa6.17□□□□□ -1.42
UPF3B-203ENST00000478840 MAGED2Q9UNF1 606 aaPredicted RBP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 RUVBL1Q9Y265 456 aaKnown RBP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.17□□□□□ -1.42
UPF3B-203ENST00000478840 A0A087WWL8 130 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 CXorf49A8MYA2 514 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 ARHGAP6O43182 974 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 SASH1O94885 1247 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 ANXA1P04083 346 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 RARBP10826 455 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 VEGFAP15692 232 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 KCNJ5P48544 419 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 RRADP55042 308 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 CTBP1Q13363 440 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 MRPL49Q13405 166 aaKnown RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 LMBRD2Q68DH5 695 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 KRT40Q6A162 431 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF365Q70YC5 407 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 ADGRE4PQ86SQ3 457 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 TXLNBQ8N3L3 684 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 PAF1Q8N7H5 531 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 TEX19Q8NA77 164 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 NLGN4YQ8NFZ3 816 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 OR5M3Q8NGP4 307 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 TRAPPC12Q8WVT3 735 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 MBD6Q96DN6 1003 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 BORCS6Q96GS4 357 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 TBATAQ96M53 351 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 PPP1R16BQ96T49 567 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 RMDN3Q96TC7 470 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 MYOCQ99972 504 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 MRI1Q9BV20 369 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 PACSIN1Q9BY11 444 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 BRD9Q9H8M2 597 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 A1CFQ9NQ94 594 aaKnown RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 C9orf78Q9NZ63 289 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 IRAK3Q9Y616 596 aa6.16□□□□□ -1.42
UPF3B-203ENST00000478840 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-203ENST00000478840 PYCARD-AS1I3L0S3 204 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 SYT5O00445 386 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms