RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SIAH1Q8IUQ4 282 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RNF10Q8N5U6 811 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RNF148Q8N7C7 305 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CHURC1Q8WUH1 139 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 EXT2Q93063 718 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 DDX50Q9BQ39 737 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PTPRHQ9HD43 1115 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SUFUQ9UMX1 484 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 COMMD10Q9Y6G5 202 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 AK5Q9Y6K8 562 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 NEMP1O14524 444 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 USP2O75604 605 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RARAP10276 462 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PCP11498 1178 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PSMA2P25787 234 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 GNA15P30679 374 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CDH8P55286 799 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RPS6P62753 249 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 KRT81Q14533 505 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SLMAPQ14BN4 828 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MEA1Q16626 185 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ARMC3Q5W041 872 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 DARS2Q6PI48 645 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ZCCHC23Q6ZST2 131 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RSPH3Q86UC2 560 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 C1orf131Q8NDD1 294 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PYROXD1Q8WU10 500 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 FAM151AQ8WW52 585 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 EMID1Q96A84 441 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ACCSQ96QU6 501 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 P2RX7Q99572 595 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 WDR18Q9BV38 432 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 NOD2Q9HC29 1040 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 GBA2Q9HCG7 927 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 COG5Q9UP83 839 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MRPL11Q9Y3B7 192 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CITO14578 2027 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 PLEKHG2Q9H7P9 1386 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 COL11A2P13942 1736 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 WDR64B1ANS9 1081 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CHUKO15111 745 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ATP9AO75110 1047 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 STAM2O75886 525 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ENO1P06733 434 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CYP3A4P08684 503 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 VCAM1P19320 739 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ALDH3A1P30838 453 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 MSX2P35548 267 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CAP2P40123 477 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ALDH18A1P54886 795 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CUL1Q13616 776 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 EFTUD2Q15029 972 aaKnown RBP eCLIP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 WDR72Q3MJ13 1102 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 HABP4Q5JVS0 413 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CES3Q6UWW8 571 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 HHIPL2Q6UWX4 724 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 TMEM179Q6ZVK1 233 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 SDCCAG8Q86SQ7 713 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 NOP9Q86U38 636 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 KCTD6Q8NC69 237 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 RNF34Q969K3 372 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 TEPSINQ96N21 525 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ISCUQ9H1K1 167 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 PORCNQ9H237 461 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 TMBIM4Q9HC24 238 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 WRAP73Q9P2S5 460 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 TNS1Q9HBL0 1735 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 SPTBN2O15020 2390 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ANKRD31Q8N7Z5 1873 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 NUMA1Q14980 2115 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 FAM237AA0A1B0GTK4 181 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 SSU72P8A0A1W2PR75 194 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 GOLGA8TH3BQL2 631 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 SLITRK3O94933 977 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 GCFC2P16383 781 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 GJA5P36382 358 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 GNL1P36915 607 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 SESN2P58004 480 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CRADDP78560 199 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CACNB2Q08289 660 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 FASTKD3Q14CZ7 662 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 ANO4Q32M45 955 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 C11orf63Q6NUN7 778 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 UTS2BQ765I0 119 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 TMC3Q7Z5M5 1100 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 NT5DC3Q86UY8 548 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 VTI1AQ96AJ9 217 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 FAM161BQ96MY7 647 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 MTMR9Q96QG7 549 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 APOL2Q9BQE5 337 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 TXNRD2Q9NNW7 524 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 R3HDM2Q9Y2K5 976 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 PITPNM2Q9BZ72 1349 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CHD7Q9P2D1 2997 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 MEIS2O14770 477 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 STK10O94804 968 aaKnown RBP5.28□□□□□ -1.56
CCDC39-204ENST00000476379 APRTP07741 180 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 INHBAP08476 426 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 CFHP08603 1231 aa5.28□□□□□ -1.56
CCDC39-204ENST00000476379 RPA1P27694 616 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms