RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 RDM1Q8NG50 284 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 KAT6BQ8WYB5 2073 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 METTL21EPA6NDL7 271 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 PSMD11O00231 422 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 PSMG1O95456 288 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 ITGA1P56199 1179 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 POU5F1Q01860 360 aaKnown RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 DLG1Q12959 904 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 SMCO1Q147U7 214 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 C2CD6Q53TS8 623 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 GARNL3Q5VVW2 1013 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 TMPRSS6Q8IU80 811 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 ELMOD2Q8IZ81 293 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 RNFT2Q96EX2 444 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 MND1Q9BWT6 205 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 STK33Q9BYT3 514 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 UVRAGQ9P2Y5 699 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 KCNJ14Q9UNX9 436 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 ZSCAN5CA6NGD5 496 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MAP3K13O43283 966 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MPP2Q14168 576 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MEI1Q5TIA1 1274 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 FAM129BQ96TA1 746 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ZSCAN5AQ9BUG6 496 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ZSWIM6Q9HCJ5 1215 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 FARSBQ9NSD9 589 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 CATSPERZQ9NTU4 200 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 IMPAD1Q9NX62 359 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 KANSL1LA0AUZ9 987 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 I3L521 148 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ZBTB7BO15156 539 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 BAG3O95817 575 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ITGA2BP08514 1039 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MAPK10P53779 464 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 PABPC1LQ4VXU2 614 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ALFQ53S48 1182 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 KIAA1755Q5JYT7 1200 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF658Q5TYW1 1059 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 KRT25Q7Z3Z0 450 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 SAPCD2Q86UD0 394 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 YME1L1Q96TA2 773 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 DDX50Q9BQ39 737 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 INTS2Q9H0H0 1204 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MAGEF1Q9HAY2 307 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 TMBIM4Q9HC24 238 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MRPL47Q9HD33 250 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 VAV3Q9UKW4 847 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 POLIQ9UNA4 740 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF232Q9UNY5 417 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 SCAF8Q9UPN6 1271 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 TDRKHQ9Y2W6 561 aaKnown RBP9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MYO1GB0I1T2 1018 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 EXTL3O43909 919 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ACADVLP49748 655 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 SLC15A2Q16348 729 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 PARP10Q53GL7 1025 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 WDR45BQ5MNZ6 344 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 ANKRD23Q86SG2 305 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 SHCBP1Q8NEM2 672 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 NAT14Q8WUY8 206 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MAGEB18Q96M61 343 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 BTBD10Q9BSF8 475 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 MANSC1Q9H8J5 431 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 C1orf112Q9NSG2 853 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 PTTG2Q9NZH5 202 aa9.4□□□□□ -0.9
COL6A3-210ENST00000473258 PI4KAP2A4QPH2 592 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 EFCAB10A6NFE3 127 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 SPDYE2BA6NHP3 402 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 SPDYE6P0CI01 402 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 VDRP11473 427 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 S100A2P29034 98 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 NUDT2P50583 147 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 NCF4Q15080 339 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 CFAP70Q5T0N1 1121 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 ARHGEF16Q5VV41 709 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 CCDC137Q6PK04 289 aaKnown RBP9.4□□□□□ -0.91
COL6A3-210ENST00000473258 CCDC117Q8IWD4 279 aaPredicted RBP9.4□□□□□ -0.91
COL6A3-210ENST00000473258 ZBED8Q8IZ13 594 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 C4orf33Q8N1A6 199 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 PI4KAP1Q8N8J0 262 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 RDH13Q8NBN7 331 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 ZFAND2BQ8WV99 257 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 DHX38Q92620 1227 aaKnown RBP9.4□□□□□ -0.91
COL6A3-210ENST00000473258 OSBPL6Q9BZF3 934 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 UBXN6Q9BZV1 441 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF222Q9UK12 451 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 PALD1Q9ULE6 856 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 INPP5FQ9Y2H2 1132 aa9.4□□□□□ -0.91
COL6A3-210ENST00000473258 TPPPO94811 219 aa9.39□□□□□ -0.91
COL6A3-210ENST00000473258 FARP2O94887 1054 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-210ENST00000473258 F8A1P23610 371 aa9.39□□□□□ -0.91
COL6A3-210ENST00000473258 IL32P24001 234 aa9.39□□□□□ -0.91
COL6A3-210ENST00000473258 FNTAP49354 379 aa9.39□□□□□ -0.91
COL6A3-210ENST00000473258 SRP54P61011 504 aaKnown RBP9.39□□□□□ -0.91
COL6A3-210ENST00000473258 PDIA2Q13087 525 aaKnown RBP9.39□□□□□ -0.91
COL6A3-210ENST00000473258 ACCSLQ4AC99 568 aa9.39□□□□□ -0.91
COL6A3-210ENST00000473258 EAPPQ56P03 285 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-210ENST00000473258 FAM26FQ5R3K3 315 aa9.39□□□□□ -0.91
COL6A3-210ENST00000473258 RRM2BQ7LG56 351 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms