RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 AARSP49588 968 aaKnown RBP eCLIP12.91□□□□□ -0.34
VPS13D-204ENST00000469054 CLDN10P78369 228 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 DSG1Q02413 1049 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 ENPEPQ07075 957 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 USP41Q3LFD5 358 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 DPCR1Q3MIW9 517 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 KIAA0319Q5VV43 1072 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 KIAA1841Q6NSI8 718 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 CAVIN1Q6NZI2 390 aaKnown RBP12.91□□□□□ -0.34
VPS13D-204ENST00000469054 INTS8Q75QN2 995 aaKnown RBP12.91□□□□□ -0.34
VPS13D-204ENST00000469054 USP37Q86T82 979 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 GPR65Q8IYL9 337 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 MICALL1Q8N3F8 863 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 CSGALNACT2Q8N6G5 542 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 C1orf127Q8N9H9 656 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 FAM84AQ96KN4 292 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 CEP63Q96MT8 703 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 DUSP9Q99956 384 aaKnown RBP12.91□□□□□ -0.34
VPS13D-204ENST00000469054 MRPL17Q9NRX2 175 aaKnown RBP12.91□□□□□ -0.34
VPS13D-204ENST00000469054 DACH1Q9UI36 760 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 RWDD2AQ9UIY3 292 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 ITGA11Q9UKX5 1188 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 SSX2IPQ9Y2D8 614 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 IRAK3Q9Y616 596 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 MYO9BQ13459 2157 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 C2orf71A6NGG8 1288 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 LRRIQ3A6PVS8 624 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 HIDE1A8MVS5 230 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 I3L4J1 428 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 PPEF2O14830 753 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 IKBKBO14920 756 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 SLC16A3O15427 465 aaKnown RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 LILRB3O75022 631 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 ITGB3P05106 788 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 KRT13P13646 458 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 FGFR3P22607 806 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 POLR2BP30876 1174 aaKnown RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 GLUD2P49448 558 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 VAMP7P51809 220 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 AP3M2P53677 418 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 LILRA4P59901 499 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 MCCD1P59942 119 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 DLG4P78352 724 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 RBP5P82980 135 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 PTPN14Q15678 1187 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 CCDC85BQ15834 202 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 TCEAL5Q5H9L2 206 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 CT47A1Q5JQC4 288 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 SASS6Q6UVJ0 657 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-204ENST00000469054 TRAPPC11Q7Z392 1133 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 FILIP1Q7Z7B0 1213 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 CEP57Q86XR8 500 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 CXorf38Q8TB03 319 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 AUTS2Q8WXX7 1259 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 ZNF516Q92618 1163 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 PPP2R3CQ969Q6 453 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 BORCS6Q96GS4 357 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 SUSD3Q96L08 255 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 B3GALT6Q96L58 329 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 TTPALQ9BTX7 342 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 SIX4Q9UIU6 781 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 AGAP1Q9UPQ3 857 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.34
VPS13D-204ENST00000469054 CHD9Q3L8U1 2897 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 C2CD2LO14523 706 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 SYN3O14994 580 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 SPTLC1O15269 473 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 C4BPAP04003 597 aaKnown RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 KRT19P08727 400 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 ERCC5P28715 1186 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 CA8P35219 290 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 PNPLA4P41247 253 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 TAF6P49848 677 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 BFSP1Q12934 665 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 SKOR2Q2VWA4 1001 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 RTP2Q5QGT7 225 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 C1orf220Q5T0J3 134 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 SCARA3Q6AZY7 606 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 ADGRD2Q7Z7M1 963 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 RBM23Q86U06 439 aaKnown RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 LRRC52Q8N7C0 313 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 MAFAQ8NHW3 353 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 PPM1EQ8WY54 764 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 RIN2Q8WYP3 895 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 ZNF560Q96MR9 790 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 MED15Q96RN5 788 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 TLE6Q9H808 572 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 RXFP1Q9HBX9 757 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 R3HCC1Q9Y3T6 440 aaKnown RBP12.89□□□□□ -0.35
VPS13D-204ENST00000469054 CHD7Q9P2D1 2997 aa12.89□□□□□ -0.35
VPS13D-204ENST00000469054 M0QZQ0 153 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 PER2O15055 1255 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 FGFR1OPO95684 399 aaKnown RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 CST3P01034 146 aaPredicted RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 TKTP29401 623 aaKnown RBP12.88□□□□□ -0.35
VPS13D-204ENST00000469054 HYAL1Q12794 435 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 DUSP6Q16828 381 aa12.88□□□□□ -0.35
VPS13D-204ENST00000469054 PDXDC1Q6P996 788 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms