RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SARSP49591 514 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 MEI1Q5TIA1 1274 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 PRPF38AQ8NAV1 312 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 C18orf8Q96DM3 657 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 FRMD8P1Q9BZ68 369 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 SPDYE2BA6NHP3 402 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 SPDYE6P0CI01 402 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 CYTH1Q15438 398 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 TTC39BQ5VTQ0 682 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 CDC26Q8NHZ8 85 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 GOLPH3Q9H4A6 298 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 NYAP2Q9P242 653 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 B2RBV5 119 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 E7ENQ6 273 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 SNRNP35Q16560 246 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 SWSAP1Q6NVH7 229 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 KLHL11Q9NVR0 708 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 NDUFA13Q9P0J0 144 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 LRRIQ1Q96JM4 1722 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 A0A087X0T9 212 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 FAM228BP0C875 321 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 GEMIN4P57678 1058 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 RWDD4Q6NW29 188 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 SLC30A5Q8TAD4 765 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 CCDC90BQ9GZT6 254 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 PAK5Q9P286 719 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 FLT1P17948 1338 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 FAM196BA6NMK8 535 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 MAN1A2O60476 641 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 NLRP11P59045 1033 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 SCHIP1Q9P0W5 487 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 SNX2O60749 519 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 C1orf228Q6PIY5 440 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 IL1RAPL1Q9NZN1 696 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 SLIT1O75093 1534 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 DGAT1O75907 488 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 POU5F1BQ06416 359 aa19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 APOBEC3FQ8IUX4 373 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 RAVER2Q9HCJ3 691 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-204ENST00000463837 RASA1P20936 1047 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 HSPA13P48723 471 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 NKX1-1Q15270 411 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 STX18Q9P2W9 335 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 PDHBP11177 359 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 ACTR2P61160 394 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 PPIL6Q8IXY8 311 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 LACRTQ9GZZ8 138 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 DHX35Q9H5Z1 703 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 COL3A1P02461 1466 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 MAP2K7O14733 419 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 PCYT1AP49585 367 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 THTPAQ9BU02 230 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 KCNN4O15554 427 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 PSTPIP1O43586 416 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 LRRC8EQ6NSJ5 796 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 CPA5Q8WXQ8 436 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 GCNAQ96QF7 691 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 RNF146Q9NTX7 359 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 PKD2L2Q9NZM6 624 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 DMGDHQ9UI17 866 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 CNOT7Q9UIV1 285 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 SLC8A2Q9UPR5 921 aa19.96■□□□□ 0.79
CCDC88B-204ENST00000463837 PSMD3O43242 534 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 HUS1O60921 280 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 CYLC2Q14093 348 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 CENPPQ6IPU0 288 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 GRB10Q13322 594 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 SERPINB10P48595 397 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 SKOR1P84550 965 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 DSTYKQ6XUX3 929 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 RMDN2Q96LZ7 410 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 DLGAP2Q9P1A6 1054 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 DUSP10Q9Y6W6 482 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 ADGRB2O60241 1585 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 PON1P27169 355 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 C3orf62Q6ZUJ4 267 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 CATSPER4Q7RTX7 472 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 AENQ8WTP8 325 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 KRT35Q92764 455 aa19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 MARCOQ9UEW3 520 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-204ENST00000463837 ANP32DO95626 131 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 GPSM2P81274 684 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 SLC20A2Q08357 652 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 SYCP2LQ5T4T6 812 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 RBBP8NLQ8NC74 664 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 AIPL1Q9NZN9 384 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 MAD2L2Q9UI95 211 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 GRID1Q9ULK0 1009 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 PHTF1Q9UMS5 762 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 ECE2O60344 883 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 WEE2P0C1S8 567 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 UGP2Q16851 508 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 RSAD1Q9HA92 442 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 EIF1ADQ8N9N8 165 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 E2F7Q96AV8 911 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 TRIM62Q9BVG3 475 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 NEURL4Q96JN8 1562 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 SASH3O75995 380 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 ATICP31939 592 aa19.94■□□□□ 0.78
CCDC88B-204ENST00000463837 ABCE1P61221 599 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms